Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c20
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058 36 0.023
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248 32 0.50
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 31 1.1
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 30 1.5
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 30 2.0
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935... 29 2.6
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 29 2.6
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789... 28 6.1
05_01_0136 + 915140-915487,915781-916392 28 6.1
01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675 28 8.1
01_05_0125 - 18382402-18382761,18382863-18383036 28 8.1
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 28 8.1
>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
Length = 365
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 354 RERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLL 488
RER R++ ++ FA +RRLVP P +K S+ EI+ AI YI +L
Sbjct: 95 RERERRRRMNDMFAGIRRLVPNLP--EKSSRVEIIDGAIAYIKML 137
>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
Length = 248
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 333 RKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLE 503
RKL N ER R++ ++ ++ LR L+P KKLS + ++YI L + +E
Sbjct: 69 RKLSHNAYERDRRKQLNELYSSLRALLPDADHTKKLSIPTTVSRVLKYIPELQKQVE 125
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 357 ERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKNHSVTNKE 536
ER R++ ++ F EL ++P KK+ K IL A+RY+ + E L + H E
Sbjct: 197 ERKRREKINQRFIELSTVIPGL---KKMDKATILSDAVRYVKEMQEKLSELEQHQNGGVE 253
Query: 537 NSGSLAIKC 563
++ L C
Sbjct: 254 SAILLKKPC 262
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 399 LRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKNHSVTNKENSGSL 551
LR + PP+KK+S+ R A R + LL L+ + + KE G L
Sbjct: 163 LRMIGVEKPPEKKISEENQRRYAFRIVDLLLPWLKELQQEQMKEKELEGRL 213
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 405 RLVPTHPPDKKLSKNEILRMA-IRYIGLLCEVLEWQKNHSVTNKENSGSLAIK 560
R++ H + K NEI M IRY+GL C LE + SV+N N SL +K
Sbjct: 617 RVIDIHGLELKKLPNEIGSMIHIRYLGLQCGQLE-KLPPSVSNLVNLQSLILK 668
>11_04_0470 -
18092681-18092695,18092725-18092811,18093528-18093593,
18093696-18093740,18093850-18093903,18093987-18094082,
18094161-18094241,18095634-18095714,18095798-18095884,
18095976-18096074,18096644-18096769,18098162-18098248,
18098321-18098389,18098711-18098806,18099053-18099169,
18099710-18099790,18099873-18100010,18100307-18100580,
18100735-18100830,18101612-18101757,18102883-18103141,
18103434-18103537,18103623-18103748,18103872-18103982,
18104200-18104304
Length = 881
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 32 SLL*RNLIQQPIKQRSRILFIGLQVNSVCLYANCYRDIKEESA 160
S+L +LI +K+R++I+ + N VC Y+ C RD+ E +
Sbjct: 695 SVLDHDLIHLSLKRRAQIVDMH---NQVCTYSKCLRDLLENES 734
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 152 LP*CLCNSWHINTHY 108
+P CLC WH++ HY
Sbjct: 557 IPGCLCRKWHLHLHY 571
>10_08_0075 -
14676835-14677173,14677776-14678426,14678734-14678948,
14679510-14679783,14680249-14680410
Length = 546
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +3
Query: 444 KNEILRMAIRYIGLLCEVLEW-------QKNHSVTNKENSGSLAIKCESPLS 578
+ E L + +R++ +++EW + S+T KE SL IKC PLS
Sbjct: 165 QQEQLALCLRFVNKTGQLVEWFLGLVHVEDTTSLTLKEAIKSLLIKCHLPLS 216
>05_01_0136 + 915140-915487,915781-916392
Length = 319
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 504 WQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQEEYFRYGNE 683
W+ + NK +G AIKC+ +S +S + LK + K +H+ +E F N
Sbjct: 84 WKIVETALNKSGNGFDAIKCKLTIS-ESEKATLKDRDRRLLSKPIKYFHEMQELFSGSNA 142
Query: 684 E 686
+
Sbjct: 143 D 143
>01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675
Length = 273
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 354 RERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILR 461
RER R++ +S +A+L+ ++PT K+ ++R
Sbjct: 135 RERLRRERLSQGYADLQAILPTGASSSKVLVKSLIR 170
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 357 ERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLL 488
ER R+Q +S + EL L+P PP + S I+ AI +G L
Sbjct: 34 ERARRQTMSRLYDELGALLPNLPP--RASTTRIVEEAIACVGEL 75
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 486 LCEVLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHD 653
L E+++ ++ + NKENSG + C+ +R RL + D P +K++ +
Sbjct: 230 LFELID-RRAEEILNKENSGCKVLLCDEKTEDLARMFRLFSRITDGLLPVSKIFKE 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,190
Number of Sequences: 37544
Number of extensions: 376070
Number of successful extensions: 992
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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