Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c20
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 52 5e-07
U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop heli... 51 7e-07
AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like pro... 51 7e-07
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 48 5e-06
U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop heli... 47 1e-05
U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein. 46 2e-05
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 43 2e-04
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 43 2e-04
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 43 2e-04
Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 37 0.016
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 37 0.016
Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical pr... 36 0.027
U40797-4|AAB37551.1| 150|Caenorhabditis elegans Helix loop heli... 32 0.34
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 30 1.4
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +3
Query: 354 RERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLE 503
RER R ++ + AF++LR L+PT P +KKLSK EILR +I YI L +L+
Sbjct: 40 RERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLLQ 89
>U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop helix
protein 13 protein.
Length = 147
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 327 PPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVL 500
P + + RER R +++ AF ELR +PT P +K+LSK + L +AI YI +L +VL
Sbjct: 40 PEERQTASIRERKRMCSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVL 97
>AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like
protein.
Length = 147
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 327 PPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVL 500
P + + RER R +++ AF ELR +PT P +K+LSK + L +AI YI +L +VL
Sbjct: 40 PEERQTASIRERKRMCSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVL 97
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 309 NPCLLRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLL 488
+P LLR R+ N RER R ++ A+ ELR ++P KKLSK E L+MA +YI L
Sbjct: 66 SPQLLRM-RRSAANERERRRMNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECL 124
Query: 489 CEVLEW-QKNHSVTNK 533
++L+ KN ++ +K
Sbjct: 125 SQILKQDSKNENLKSK 140
>U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop helix
protein 19 protein.
Length = 111
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKNHSVT 527
N RER RQ+++ AF LR +P D+K SK E L+ A +YI L +LE + +S
Sbjct: 7 NARERCRQKSIGNAFNMLRNHLPKQLRDRKPSKAETLKSAAQYISHLLRILEKEIENSSN 66
Query: 528 N 530
N
Sbjct: 67 N 67
>U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein.
Length = 71
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 333 RKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEW-Q 509
R+ N RER R ++ A+ ELR ++P KKLSK E L+MA +YI L ++L+
Sbjct: 2 RRSAANERERRRMNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLSQILKQDS 61
Query: 510 KNHSVTNK 533
KN ++ +K
Sbjct: 62 KNENLKSK 69
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVL 500
N RER R +NV+ + LR+ +P H +K++SK + LR+AIRYI L +L
Sbjct: 179 NERERCRVRNVNDGYERLRKHLPVHFDEKRISKVDTLRLAIRYIKHLDNLL 229
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +3
Query: 294 ELSNLNPCLL--RPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMA 467
+ SN P + R R++ N RER R ++ A LR +P +KLSK E LR+A
Sbjct: 5 DTSNFAPAEISKRKVRRVKANGRERARMHGLNNALDMLREYIPITTQHQKLSKIETLRLA 64
Query: 468 IRYIGLLCEVLEWQKNHSVTNKENSGSLA 554
YI L +L Q N T E + +LA
Sbjct: 65 RNYIDALQRML--QTNEQPTPLEYAHTLA 91
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKN 515
N RER R + ++ AF LR+L+P+ P D K+SK LR+A YI L E+ QKN
Sbjct: 26 NRRERQRTKELNDAFTLLRKLIPSMPSD-KMSKIHTLRIATDYISFLDEM---QKN 77
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKN 515
N RER R + ++ AF LR+L+P+ P D K+SK LR+A YI L E+ QKN
Sbjct: 26 NRRERQRTKELNDAFTLLRKLIPSMPSD-KMSKIHTLRIATDYISFLDEM---QKN 77
>Z22179-9|CAD90178.1| 428|Caenorhabditis elegans Hypothetical
protein F58A4.7c protein.
Length = 428
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 306 LNPCLLRPPRKL---FTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILR 461
L+P L P R++ NC ER R Q+++ F LR L+P +KLSK IL+
Sbjct: 99 LSPTSLDPDRRMRRQIANCNERRRMQSINAGFLALRALLP-RKEGEKLSKAAILQ 152
>Z22179-7|CAA80167.2| 429|Caenorhabditis elegans Hypothetical
protein F58A4.7a protein.
Length = 429
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 306 LNPCLLRPPRKL---FTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILR 461
L+P L P R++ NC ER R Q+++ F LR L+P +KLSK IL+
Sbjct: 99 LSPTSLDPDRRMRRQIANCNERRRMQSINAGFLALRALLP-RKEGEKLSKAAILQ 152
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 36.7 bits (81), Expect = 0.016
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDK-KLSKNEILRMAIRYIGLLCEVLEWQKNHSV 524
N RER R V+ F L+ VP +K KLSK E LR A RYI + L+ Q S
Sbjct: 65 NERERKRVDQVNQGFVLLQERVPKAAGNKAKLSKVETLREAARYI----QELQKQLGMSS 120
Query: 525 TNKENS--GSLAIKCESPLSPQS 587
T+ NS +SP+ PQS
Sbjct: 121 TSFHNSMPADFPTPEQSPVYPQS 143
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 36.7 bits (81), Expect = 0.016
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDK-KLSKNEILRMAIRYIGLLCEVLEWQKNHSV 524
N RER R V+ F L+ VP +K KLSK E LR A RYI + L+ Q S
Sbjct: 32 NERERKRVDQVNQGFVLLQERVPKAAGNKAKLSKVETLREAARYI----QELQKQLGMSS 87
Query: 525 TNKENS--GSLAIKCESPLSPQS 587
T+ NS +SP+ PQS
Sbjct: 88 TSFHNSMPADFPTPEQSPVYPQS 110
>Z22179-8|CAA80170.2| 431|Caenorhabditis elegans Hypothetical
protein F58A4.7b protein.
Length = 431
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 300 SNLNPCLLRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILR 461
++L+P R+ NC ER R Q+++ F LR L+P +KLSK IL+
Sbjct: 102 TSLDPDRRSRMRRQIANCNERRRMQSINAGFLALRALLP-RKEGEKLSKAAILQ 154
>U40797-4|AAB37551.1| 150|Caenorhabditis elegans Helix loop helix
protein 12 protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 321 LRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYI 479
L R+ N RER R ++G F L L+P +LS+ +ILR A YI
Sbjct: 10 LNTDRRSRANERERQRVSEMNGMFDVLLNLLPPSHFKTRLSRVQILREATSYI 62
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYI 479
N RER R V+ F LR + KK SK + LR A++YI
Sbjct: 108 NERERKRVHQVNHGFDVLRNRLQPKNHTKKWSKADTLREAVKYI 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,243
Number of Sequences: 27780
Number of extensions: 323792
Number of successful extensions: 958
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -