Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c20
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family pr...    36   0.019
At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr...    36   0.025
At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family pr...    34   0.078
At2g43140.1 68415.m05357 basic helix-loop-helix (bHLH) family pr...    34   0.078
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    34   0.10 
At3g60710.1 68416.m06792 F-box family protein contains F-box dom...    33   0.14 
At1g71200.1 68414.m08215 basic helix-loop-helix (bHLH) family pr...    31   0.73 
At5g04150.1 68418.m00403 basic helix-loop-helix (bHLH) family pr...    31   0.96 
At4g15730.1 68417.m02394 expressed protein                             30   1.3  
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot...    29   2.2  
At4g14750.1 68417.m02270 calmodulin-binding family protein conta...    29   3.9  
At5g12320.1 68418.m01448 ankyrin repeat family protein contains ...    28   5.1  
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    28   6.8  
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr...    27   8.9  

>At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 242

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
 Frame = +3

Query: 273 TIQNISEELSNL---NPCLLRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLS 443
           T +N+S E +     NP +++   KL  N  ER R++ ++  F+ LR  +P     KKLS
Sbjct: 42  THENVSSENNRTLLDNPVVMK---KLNHNASERERRKKINTMFSSLRSCLPPTNQTKKLS 98

Query: 444 KNEILRMAIRYIGLLCE 494
            +  +  A++YI  L E
Sbjct: 99  VSATVSQALKYIPELQE 115


>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
           protein
          Length = 253

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 21/69 (30%), Positives = 38/69 (55%)
 Frame = +3

Query: 273 TIQNISEELSNLNPCLLRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNE 452
           ++ +   E+ N NP +++   KL  N  ER R++ ++  F+ LR  +P     KKLS  E
Sbjct: 56  SVSSEGNEIDN-NPVVVK---KLNHNASERDRRKKINTLFSSLRSCLPASDQSKKLSIPE 111

Query: 453 ILRMAIRYI 479
            +  +++YI
Sbjct: 112 TVSKSLKYI 120


>At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family
           protein
          Length = 258

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = +3

Query: 273 TIQNISEELSNLNPCLLRPPRKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNE 452
           ++ +   E+ N NP +++   KL  N  ER R++ ++  F+ LR  +P     KKLS   
Sbjct: 61  SVSSEGNEIDN-NPVVVK---KLNHNASERDRRRKINSLFSSLRSCLPASGQSKKLSIPA 116

Query: 453 ILRMAIRYIGLLCE 494
            +  +++YI  L E
Sbjct: 117 TVSRSLKYIPELQE 130


>At2g43140.1 68415.m05357 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 295

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +3

Query: 273 TIQNISEELSNLNPCLLRPPRKLFTNCR---ERWRQQNVSGAFAELRRLVPTHPPDKKLS 443
           T++N+     +  PC  R  R   T+ R   ER R+  +SG   +L+ LVP    DK+ S
Sbjct: 215 TMENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPN--MDKQTS 272

Query: 444 KNEILRMAIRYI 479
             ++L +A+ +I
Sbjct: 273 YADMLDLAVEHI 284


>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = +3

Query: 312 PCLLRPPRKLFTNCR---ERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYI 479
           PC +R  R   T+ R   ER R+  +SG   +L+ LVP    DK+ S +++L +A+++I
Sbjct: 280 PCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPN--MDKQTSYSDMLDLAVQHI 336


>At3g60710.1 68416.m06792 F-box family protein contains F-box domain
           Pfam:PF00646 ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 320

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = -2

Query: 556 IARLPEFSLFVTLWFFCHSRTSQRSPMYLIAIRSISFFDSFLSGG*VGTSLRSSANAPLT 377
           + +LPEF     L+ F H+  S+  P+YL +  ++   D  L G      +   A++P+ 
Sbjct: 165 LQQLPEFKNLTRLYAFLHTDYSEMLPIYLSSSPNLKSIDLELHG---YPKMEEIASSPVP 221

Query: 376 FCCLQRSLQFVK 341
             CLQ S++ VK
Sbjct: 222 -KCLQTSIENVK 232


>At1g71200.1 68414.m08215 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 255

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 348 NCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCE-----VLEWQK 512
           N +ER R+  +  ++  L  L+P H          +L + +RY+ L+ E     + +WQK
Sbjct: 66  NAKERLRRMRLHASYLTLGTLLPDHSSSSSKVLFSLLLLQVRYVLLVVELYITFLADWQK 125

Query: 513 NHS 521
             S
Sbjct: 126 KWS 128


>At5g04150.1 68418.m00403 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain; PMID: 12679534
          Length = 240

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 333 RKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYI 479
           +KL  N  ER R++ ++  ++ LR L+P     +KLS    +   ++YI
Sbjct: 66  KKLNHNASERDRRRKLNALYSSLRALLPLSDQKRKLSIPMTVARVVKYI 114


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 540 SGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQEE 662
           SGSL  K +  ++   R++RL      +DG  +KL+ D EE
Sbjct: 674 SGSLCTKAQGNINSTVRKIRLMGYKQGKDGKNSKLFADGEE 714


>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 580

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 480 GLLCEVLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQE 659
           G L   +E   N S+        + ++    LSP S  L+L  +C D    RA +   + 
Sbjct: 130 GNLVYKIEVFLNSSILQSWKDSIIVLQTTRALSPYSEELKLTGRCLDSIASRASIDTSKV 189

Query: 660 EY-FRYGNEEN 689
           E+ + Y  ++N
Sbjct: 190 EWSYTYSKKKN 200


>At4g14750.1 68417.m02270 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 387

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/82 (20%), Positives = 37/82 (45%)
 Frame = +3

Query: 444 KNEILRMAIRYIGLLCEVLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCFDE 623
           ++ + R A+R +  L ++    + H V  +  +    ++    L  ++R  R++    D 
Sbjct: 116 RSHLARKALRALKGLVKLQALVRGHLVRKQATATLRCMQALITLQAKAREQRIRMIGGDS 175

Query: 624 DGPRAKLYHDQEEYFRYGNEEN 689
             PR  ++  +   F + NEEN
Sbjct: 176 TNPRTSIHKTRINNFYHENEEN 197


>At5g12320.1 68418.m01448 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 144

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 505 HSRTSQ-RSPMYLIAIRS-ISFFDSFLSGG*VGTSLRSSANAPLTFCCLQRSLQFVK 341
           HSR SQ R+ +++ A    ++  +  +S G    +L    NAPL + CL   ++ VK
Sbjct: 38  HSRDSQGRTALHMAAANGHMTIVEYLISEGVDINALNDENNAPLHWACLNGHVEVVK 94


>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 495 VLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQEEYFRY 674
           +L   KN    +  NS     K      P+  ++  +    D+DG   KL+ ++ +  R+
Sbjct: 340 LLRESKNEDEESNPNSEGFFKKLFRDSKPEDDKVPKEVDDEDKDGFLKKLFREKNDDKRH 399

Query: 675 GNEENQ 692
           G+E+N+
Sbjct: 400 GSEKNE 405


>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 357 ERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCE-VLEWQKNHSV 524
           E+ R+  ++  F  L  ++P +  D+K  K   L   I YI  L E V  ++ +H +
Sbjct: 42  EQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQEKVHMYEDSHQM 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,357
Number of Sequences: 28952
Number of extensions: 301347
Number of successful extensions: 805
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)