Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c19
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              280   7e-76
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         58   9e-09
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    29   5.0  
SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)          29   5.0  
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)                 28   6.6  
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   28   8.7  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  280 bits (687), Expect = 7e-76
 Identities = 133/228 (58%), Positives = 165/228 (72%), Gaps = 3/228 (1%)
 Frame = +1

Query: 43  KEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFK 222
           +E E TIAED+VVTKYK+AG + NR+L ++I       +AR +CE GD L+LEET+KV+K
Sbjct: 10  EEEEPTIAEDVVVTKYKMAGDMANRILLKLIEAANAGTTARTLCEKGDALILEETDKVYK 69

Query: 223 KEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 402
           KEK+ KKGIAF TC+SVNNC+CHFSP+ SEPD  L  GDL KID G HIDGFIAV+ HT+
Sbjct: 70  KEKELKKGIAFPTCISVNNCVCHFSPLLSEPDITLNDGDLVKIDFGVHIDGFIAVIGHTI 129

Query: 403 VVG---ESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGM 573
           VVG   E++V+GR ADV               KPG EN  VTE +QK++  + CKPIEGM
Sbjct: 130 VVGCSKENKVTGRKADVLLAAYLASEVAQRMVKPGAENSTVTELVQKVAESFKCKPIEGM 189

Query: 574 LSHQLKQFRIDGEKSIILNPSEAQRKEHEKATLEKYEVYAMDVLISTG 717
           LSHQLK+  IDGEK+II NP+E QRK+H K     +EVY +DVL+STG
Sbjct: 190 LSHQLKRNVIDGEKAIIQNPNEQQRKDHSKCEFAVHEVYGVDVLVSTG 237


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +1

Query: 169 ICEFGDKLVLEETNKVFKKEKDSK--KGIAFSTCVSVNNCICHFSPIASEPDYILKKGDL 342
           +C+ G+   ++ET + ++ E D K  KG+AF T  S+N+C  H++P A +   +L   D+
Sbjct: 82  LCDVGE--AIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTPNAGDKT-VLSYDDV 138

Query: 343 AKIDLGAHIDGFIAVVAHTV 402
            KID G HI+G I   A TV
Sbjct: 139 CKIDFGTHINGRIVDCAFTV 158



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +1

Query: 247 IAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 402
           +AF T  S+N+C  H++P A +   +L   D+ KID G HI+G I   A TV
Sbjct: 2   LAFPTGCSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 52


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +1

Query: 241 KGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESE 420
           +G   S C SVN    H  P +      L+ GDL  +D+     G    +  T +VG  +
Sbjct: 103 RGFPKSVCTSVNEVAVHGIPNSR----CLQNGDLLSVDISLFYGGVHGDLCETFLVGNVD 158

Query: 421 VSGR 432
            SGR
Sbjct: 159 ESGR 162


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -1

Query: 469  H*HDELPT------KHLQHVQRLHFHPQLLYELQQL*IHQCEHQDLSWLNLLFSE-CNPV 311
            H ++ +PT      + + +VQ+L F   +   ++ L  H+C H+DL+  N+L      P+
Sbjct: 883  HSYENIPTVSTEQPEEISYVQKLKFAHGIAQGMRHLEKHKCVHRDLAARNVLLGRGLEPI 942

Query: 310  RSQWAKS 290
             S +  S
Sbjct: 943  VSDFGLS 949


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 31   MADEKEVEKTIAEDLVVTKYKLAGQIVNRV-LEQVIAKCVPDASAREICEFGDKLVLEET 207
            M + +E  +      + ++  LA ++  R  L   +AK    A   E+ E G K +LEE 
Sbjct: 837  MVEAEEQRERFKNSHIRSEAVLAAKLAARKRLRAEMAK--EKAMKNELKEMGKKQILEEK 894

Query: 208  NKVFKKEKDSKKG 246
             + F+KE + ++G
Sbjct: 895  ERKFRKEMELQEG 907


>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
          Length = 518

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +1

Query: 31  MADEKEVEKTIAE---DLVVTKYKLAGQIVNRVLEQVIAKC-VPDASAREICEFGDKLVL 198
           M  + E  K +AE   DL +  +K+      R+L+ + A C VP+   R IC   DKL  
Sbjct: 208 MIPDAECVKIVAEILADLELGDFKIKVNH-RRLLDGMFAVCGVPEGKFRTICSAVDKLD- 265

Query: 199 EETNKVFKKEKDSKKGI 249
           + T +  +KE   +KG+
Sbjct: 266 KATWEEVRKEMVDEKGL 282


>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
          Length = 722

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 518 LKPFRK*VLNMVVSQLRVCSHTN*SSSVLMERRVLY*IHQKHSVKNMKKQHLKSMK 685
           L PF K ++N    Q +VC     SS  +ME+R    I+Q  S+  +K   L++MK
Sbjct: 443 LSPFFKKMVNFTSDQRKVCFEKCSSSKPMMEKRRRARINQ--SLNELKILILEAMK 496


>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 511 HSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFH 410
           H S    +    PLH HD +PT    H+ RLH H
Sbjct: 79  HDSIRTPTTPYSPLHTHDSIPTPTYPHL-RLHTH 111


>SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 493 PGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKS 618
           P  + + VTEAI ++      KPIE    HQ  + +I  + S
Sbjct: 11  PSRDCFLVTEAISQLRRPLDRKPIESAKKHQASKKQICAKSS 52


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 266 THVENAMPFLESFSFLKTLLVSSNTSLSP 180
           TH ++ + F E+F+FL++L ++  T   P
Sbjct: 147 THQDDILAFRENFAFLRSLYLTDGTDTPP 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,859,652
Number of Sequences: 59808
Number of extensions: 414836
Number of successful extensions: 1380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)