Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c19
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 235 3e-62
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 69 4e-12
AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine am... 41 0.001
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 31 0.82
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 31 0.82
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 1.4
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 1.4
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 1.4
Z75955-9|CAB00123.1| 406|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81086-5|CAB03119.2| 182|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 5.8
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 235 bits (574), Expect = 3e-62
Identities = 110/223 (49%), Positives = 153/223 (68%), Gaps = 3/223 (1%)
Frame = +1
Query: 58 TIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDS 237
T+A D VVTKY++A +I N VL++V+A A A ++C+ GDKL+LE+T K++KKEK+
Sbjct: 22 TLANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNF 81
Query: 238 KKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG-- 411
KGIA TC+S++NCICH++P+ SE +LK G + K+DLG HIDG IA AHTVVVG
Sbjct: 82 TKGIAMPTCISIDNCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGAS 141
Query: 412 -ESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQL 588
+++V+G+ AD+ +P TEN +T+ I K +AE+G PIE MLSHQL
Sbjct: 142 KDNKVTGKLADLLRGTHDALEIAIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQL 201
Query: 589 KQFRIDGEKSIILNPSEAQRKEHEKATLEKYEVYAMDVLISTG 717
++ IDGEK II N E Q+ E EK ++K+E YA+D+L STG
Sbjct: 202 ERNEIDGEKKIIQNSGEKQKGEIEKIKIDKHEAYAIDILFSTG 244
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 68.5 bits (160), Expect = 4e-12
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 4/232 (1%)
Frame = +1
Query: 34 ADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 213
++E++ I+ + V Y+ + + +V + V + P + EICE LE T++
Sbjct: 115 SNEEKKALDISYEEVWQDYRRSAEAHRQVRKYVKSWIKPGMTMIEICER-----LETTSR 169
Query: 214 VFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVA 393
KE+ + G+AF T S+N+C H++P A + +L+ GD+ KID G H+ G + A
Sbjct: 170 RLIKEQGLEAGLAFPTGCSLNHCAAHYTPNAGDTT-VLQYGDVCKIDYGIHVRGRLIDSA 228
Query: 394 HTVVVGES----EVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKP 561
TV + R A E + ++ Y KP
Sbjct: 229 FTVHFDPKFDPLVEAVREATNAGIKESGIDVRLCDVGEIVEEVMTSHEVELDGKSYVVKP 288
Query: 562 IEGMLSHQLKQFRIDGEKSIILNPSEAQRKEHEKATLEKYEVYAMDVLISTG 717
I + H + Q+RI K++ + K E+ +E+ E+YA++ STG
Sbjct: 289 IRNLNGHSIAQYRIHAGKTVPI------VKGGEQTKMEENEIYAIETFGSTG 334
>AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine
aminopeptidase protein 1 protein.
Length = 371
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/109 (26%), Positives = 45/109 (41%)
Frame = +1
Query: 256 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRA 435
S C SVN ICH P + L+ GDL +D+ + GF + T +VG+ +V +
Sbjct: 173 SCCTSVNEVICHGIPDMRK----LENGDLCNVDVTVYHRGFHGDLNETFLVGD-KVDEES 227
Query: 436 ADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGMLSH 582
+ KPG + + IQK + G ++G H
Sbjct: 228 RKLVKVTFECLQQAIAIVKPGVKFREIGNVIQKHANANGFSVVKGYCGH 276
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 31.1 bits (67), Expect = 0.82
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 4 FSQKSQS*EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFG 183
F Q+ ++ + K V K++ + +++K++L Q VL C+ A I +FG
Sbjct: 273 FRDLVQTNDIDEVKNVSKSLYDKGLISKHEL--QSGTEVL------CMSSDGAL-IDQFG 323
Query: 184 DKLVLEETNKVFKKEKD--SKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDL 357
+++ L ET + ++KD SK +TC + + PI D +++ D +DL
Sbjct: 324 ERVYLSETTSIDLEDKDRVSKSSTRMTTCGDGAESLRYHWPIDEMLDELIEL-DSCTMDL 382
Query: 358 G 360
G
Sbjct: 383 G 383
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 31.1 bits (67), Expect = 0.82
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 4 FSQKSQS*EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFG 183
F Q+ ++ + K V K++ + +++K++L Q VL C+ A I +FG
Sbjct: 273 FRDLVQTNDIDEVKNVSKSLYDKGLISKHEL--QSGTEVL------CMSSDGAL-IDQFG 323
Query: 184 DKLVLEETNKVFKKEKD--SKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDL 357
+++ L ET + ++KD SK +TC + + PI D +++ D +DL
Sbjct: 324 ERVYLSETTSIDLEDKDRVSKSSTRMTTCGDGAESLRYHWPIDEMLDELIEL-DSCTMDL 382
Query: 358 G 360
G
Sbjct: 383 G 383
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 230 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 93
F L T+ N +LSP S LA AS + + TC T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 230 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 93
F L T+ N +LSP S LA AS + + TC T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 230 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 93
F L T+ N +LSP S LA AS + + TC T+ P N
Sbjct: 400 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 442
>Z75955-9|CAB00123.1| 406|Caenorhabditis elegans Hypothetical
protein R07B7.14 protein.
Length = 406
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 172 CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKI 351
C+FGDK + E +K+ K FS C + +P+A + + I KKG++ K+
Sbjct: 72 CKFGDKCL--EDHKIPKPGTRLCGSCRFSKCEQMG-----MNPMAIKSEIISKKGNILKM 124
Query: 352 DL-GAHIDGFIAVVAHTVVVGE 414
+L H IAV + E
Sbjct: 125 ELVKKHNRQLIAVTKEIAIDDE 146
>Z81086-5|CAB03119.2| 182|Caenorhabditis elegans Hypothetical
protein F53B6.5 protein.
Length = 182
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 556 KPIEGMLSHQLKQFRIDGEKSIILNPSEAQRKEHEKATLEKYEVYAMDVLISTG 717
KPI + + Q RI EK++ + K E+A +E+ E+YA++ STG
Sbjct: 38 KPIGSLNGQSIAQCRIHTEKTVPIV------KGGEQARMEENEIYAIETFGSTG 85
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 495 RLQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKSINVSTK 355
RL + S +T+ +C Q C T + T+T C+ N + +TK
Sbjct: 709 RLLSSWSEWTTTGTCNQTACGTCQTLTYTRT-CLKTNGCFCMGSATK 754
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,727,497
Number of Sequences: 27780
Number of extensions: 329047
Number of successful extensions: 1183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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