Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c18
         (259 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P11138 Cluster: Trans-activating transcriptional regula...    80   8e-15
UniRef50_A7T8V1 Cluster: Predicted protein; n=1; Nematostella ve...    35   0.31 
UniRef50_A7TA68 Cluster: Predicted protein; n=6; Eumetazoa|Rep: ...    32   2.9  
UniRef50_Q8IKB6 Cluster: Histone deacetylase, putative; n=4; Alv...    31   3.8  
UniRef50_A6SNI7 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_A0RQW3 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  

>UniRef50_P11138 Cluster: Trans-activating transcriptional
           regulatory protein; n=11; Nucleopolyhedrovirus|Rep:
           Trans-activating transcriptional regulatory protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 582

 Score = 80.2 bits (189), Expect = 8e-15
 Identities = 39/57 (68%), Positives = 39/57 (68%)
 Frame = +2

Query: 2   KHHMFVISKVNRRESTTXXXXXXXXXXXXXXXXVPLSDAITFAEQKLNCKYKKIEFN 172
           KHHMFVI KVNRRESTT                VPLSDAITFAEQKLNCKYKK EFN
Sbjct: 526 KHHMFVIGKVNRRESTTLHNNLLKLLALILQGLVPLSDAITFAEQKLNCKYKKFEFN 582


>UniRef50_A7T8V1 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 251

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -2

Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFS-FCSANVIASDNGTRPCNIKA- 79
           FNI  +YN  N   +YN +N   +YN  N   +Y  F+     N +  D+   P NI + 
Sbjct: 124 FNINSVYNPFNKDSVYNPVNKDSVYNPFNKDSVYNPFNKDIVYNPVNKDSVYNPFNINSV 183

Query: 78  -NNFNK 64
            N FNK
Sbjct: 184 YNPFNK 189


>UniRef50_A7TA68 Cluster: Predicted protein; n=6; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 132

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 107 LSDAITFAEQKLNCKYKKIEFN*LYIYFEFN*LYISFEFN*LYIY 241
           +S  + +    +N  Y  I  N LY+Y   N LY+    N LY+Y
Sbjct: 31  ISVNVLYLHISVNVLYLHISVNVLYLYISVNVLYLHISVNVLYLY 75



 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 107 LSDAITFAEQKLNCKYKKIEFN*LYIYFEFN*LYISFEFN*LYIY 241
           +S  + +    +N  Y  I  N LY+Y   N LY+    N LY+Y
Sbjct: 58  ISVNVLYLHISVNVLYLYISVNVLYLYISVNVLYLHINVNVLYLY 102


>UniRef50_Q8IKB6 Cluster: Histone deacetylase, putative; n=4;
            Alveolata|Rep: Histone deacetylase, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 2251

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 25/81 (30%), Positives = 39/81 (48%)
 Frame = -2

Query: 252  FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSANVIASDNGTRPCNIKANN 73
            +N   MYN  N     N  N   MYN  N   +Y   + C+ N + +DN    CN    +
Sbjct: 1124 YNQNNMYNPNNMYYQNNMYNQNNMYNQNN---MYYPNNMCNPNYLYNDNNNNLCNNMLYH 1180

Query: 72   FNKLLCNVVLSLRFTLLITNM 10
            + K+  N +++ RF L I+N+
Sbjct: 1181 YFKI--NNMVNHRF-LNISNI 1198


>UniRef50_A6SNI7 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 325

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 159 FLYLQFSFCSANVIASDNGTRPCNIKANNFNKLL 58
           FL+L F+F +A      NGT+P    A + +KLL
Sbjct: 22  FLFLFFAFAAAQTANQPNGTKPLTPNATDTSKLL 55


>UniRef50_A0RQW3 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter fetus subsp. fetus 82-40|Rep: Putative
           uncharacterized protein - Campylobacter fetus subsp.
           fetus (strain 82-40)
          Length = 116

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 180 YN*LNSIFLYLQFSFCSANVIASDNGTRPCNIKANNFN 67
           Y+  NS+  Y   S   A V++ + G++ C+I+++ FN
Sbjct: 13  YSSSNSLIKYQNISISKAMVLSKEKGSKICDIQSSKFN 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,556,357
Number of Sequences: 1657284
Number of extensions: 2299969
Number of successful extensions: 4216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4188
length of database: 575,637,011
effective HSP length: 63
effective length of database: 471,228,119
effective search space used: 10367018618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)