Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c18
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical
           protein C17C3.9 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 126 NVIASDNGTRPCNIKANNFNKLLCNVV 46
           + I  +  T PC IK  N  + LCNVV
Sbjct: 84  STIPDEYRTHPCVIKFQNCIRALCNVV 110


>Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical
           protein C27C7.1 protein.
          Length = 271

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 114 SDNGTRPCNIKANNFNKLLCNVVLSLRFT 28
           S  G R   +K +NF KLL N++   + T
Sbjct: 101 SSQGARRSQLKLSNFPKLLANLMQDTKAT 129


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 150 LQFSFCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 37
           L   FC A  I S  G    NIK     +L+C  + S+
Sbjct: 857 LLLGFCRAVGIISKTGEDDSNIKLLEMTELVCECISSV 894


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 150 LQFSFCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 37
           L   FC A  I S  G    NIK     +L+C  + S+
Sbjct: 857 LLLGFCRAVGIISKTGEDDSNIKLLEMTELVCECISSV 894


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,172,061
Number of Sequences: 27780
Number of extensions: 61423
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)