Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c18
         (259 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27220.1 68418.m03247 protein transport protein-related low s...    26   4.0  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    25   5.2  
At2g20250.1 68415.m02366 hypothetical protein                          25   6.9  
At1g31450.1 68414.m03851 aspartyl protease family protein contai...    25   6.9  
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi...    25   9.1  

>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 120 IASDNGTRPCNIKANNFNKLLCNVVLSLRFTLLITNM 10
           I  +N  R C++KANN  K + +++ S    +LI N+
Sbjct: 4   IKLENEIRLCDVKANNIRKTM-DMIKSQASDVLILNL 39


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
           repair and meiosis protein Rad9 [Coprinus cinereus]
           GI:1353390, SP|Q09725 Sister chromatid cohesion protein
           mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 110 TTEPDPVILKLTILTNYCAM 51
           + +PDP +L+ +I+ N+C M
Sbjct: 229 SVQPDPSVLQESIVQNFCEM 248


>At2g20250.1 68415.m02366 hypothetical protein
          Length = 559

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 58  VQCSALSSVHFTDYK 14
           ++CS +SS+HF +YK
Sbjct: 330 LECSPISSLHFRNYK 344


>At1g31450.1 68414.m03851 aspartyl protease family protein contains
           eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 445

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 147 QFSFCSANVIASDNGTRPCNIKANN 73
           +FS+C ++  A+ NGT   N+  N+
Sbjct: 238 KFSYCLSHTAATTNGTSVINLGTNS 262


>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 970

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 243 KYMYN*LNSKDMY--N*LNSKYMYN*LNSIFLYLQFSFCSANVIASDNGTRPCNIKA 79
           +++++ L SK+++  N + S Y  N L    L       S   +  D+ T PC IKA
Sbjct: 140 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKA 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,664,928
Number of Sequences: 28952
Number of extensions: 48940
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)