Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c17
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...   107   1e-23
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...   105   3e-23
L16622-3|ABC71837.1|  254|Caenorhabditis elegans Hypothetical pr...   101   7e-22
L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical pr...   101   7e-22
L23651-11|AAA27959.1|  250|Caenorhabditis elegans Hypothetical p...    91   1e-18
L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical pr...    79   3e-15
AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical ...    45   7e-05
Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical ...    40   0.002
AC024200-13|AAF36004.1|  214|Caenorhabditis elegans Glutathione ...    34   0.12 
Z72502-11|CAH19081.1|  484|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z72502-10|CAA96587.1|  447|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical ...    28   8.0  
AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score =  107 bits (256), Expect = 1e-23
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
 Frame = +1

Query: 229 LQTGDVLPPYS-GKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWIFNFSPK 405
           L  G + PP + G  R+++MRFCPYA+R ++ L  KNIP ++V +N D+ P W    SP 
Sbjct: 85  LHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIPVEVVNVNPDRSPNWYLPKSPI 144

Query: 406 GTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSA--- 576
           G VPALE   GK +++SN+I  YLDE +P   +   D   +A  KILVE  +P  +A   
Sbjct: 145 GRVPALEIN-GKVVWESNVIVEYLDELFPTNTILPRDAYEKAHQKILVERLSPIMNALFE 203

Query: 577 YYTAAFNAQALEPSMVETYHKGLEGLQKELETRSTKYLHGGR 702
           +Y ++ N QA   + +   H  L   +  L  R T Y  GGR
Sbjct: 204 FYGSSNNPQAQRQNDMNV-HSALRNSENLL--RDTFY--GGR 240


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score =  105 bits (252), Expect = 3e-23
 Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
 Frame = +1

Query: 214 MSEKHLQTGDVLPPYSGK--LRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWI 387
           ++ K L+TGD+ PP       R+++MRFCP A+R ++  + K IP +++ INL QKP+W 
Sbjct: 7   INSKALKTGDLPPPSPSPNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQKPDWY 66

Query: 388 FNFSPKGTVPALEYEPGKAL-FDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVE---- 552
           F  + KG VP LE+  GK L  +S +I  YLD+ +PE  +  SDP  + Q K+L+E    
Sbjct: 67  FTKNYKGQVPTLEHAEGKKLVIESAVIPEYLDDIFPETKILPSDPYEKVQQKLLLERLSD 126

Query: 553 SFAPAQSAYYTAAFNAQALEPSMVETYHKGLEGLQKELE 669
              PA    + A  N + L+    E+  K  E  +  LE
Sbjct: 127 QLTPAFGRVFRAIKNPEELKEKF-ESILKAFEEAESLLE 164


>L16622-3|ABC71837.1|  254|Caenorhabditis elegans Hypothetical
           protein C02D5.3c protein.
          Length = 254

 Score =  101 bits (241), Expect = 7e-22
 Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 7/145 (4%)
 Frame = +1

Query: 214 MSEKHLQTGDVLP--PYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWI 387
           ++ K ++ GD  P  P SG +R++ MR+CP+A+R ++  + K IP +++ I+LDQKP+W 
Sbjct: 7   LNTKVVKNGDPAPAPPASGTIRIYNMRYCPWAQRALIFASLKKIPTEVINIHLDQKPDWF 66

Query: 388 FNFSPKGTVPALEYEPGKAL-FDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFA- 561
           F    KG VPALE++ GK +  +S +I  YLD+ YPE  +  +D   + Q K+L++  + 
Sbjct: 67  FTKHYKGQVPALEHDEGKKIVIESAVIPEYLDDIYPEPRIIPTDHYEKVQQKLLLDRISG 126

Query: 562 PAQSAYY---TAAFNAQALEPSMVE 627
              SA+Y    AA  +  L+  +VE
Sbjct: 127 QLSSAFYGVVQAAKISDLLKEKLVE 151


>L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical
           protein C02D5.3a protein.
          Length = 537

 Score =  101 bits (241), Expect = 7e-22
 Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 7/145 (4%)
 Frame = +1

Query: 214 MSEKHLQTGDVLP--PYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWI 387
           ++ K ++ GD  P  P SG +R++ MR+CP+A+R ++  + K IP +++ I+LDQKP+W 
Sbjct: 290 LNTKVVKNGDPAPAPPASGTIRIYNMRYCPWAQRALIFASLKKIPTEVINIHLDQKPDWF 349

Query: 388 FNFSPKGTVPALEYEPGKAL-FDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFA- 561
           F    KG VPALE++ GK +  +S +I  YLD+ YPE  +  +D   + Q K+L++  + 
Sbjct: 350 FTKHYKGQVPALEHDEGKKIVIESAVIPEYLDDIYPEPRIIPTDHYEKVQQKLLLDRISG 409

Query: 562 PAQSAYY---TAAFNAQALEPSMVE 627
              SA+Y    AA  +  L+  +VE
Sbjct: 410 QLSSAFYGVVQAAKISDLLKEKLVE 434



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
 Frame = +1

Query: 295 PYAERTVLTLNAKNIPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKA-LFDSNIINV 471
           P A+R ++  + KNIP D++ ++L +KP+W F+   KG VP LE++ GK  + +S +I  
Sbjct: 28  PVAQRALIYASVKNIPSDVINVHLQEKPDWYFSKHYKGQVPTLEHDEGKKHVIESAVIPE 87

Query: 472 YLDEKYPEIPLQASDPLRRAQDKILVESFAPAQS-AYY 582
           YLD+ YPE  +  +DP  + Q K+L++  +   S A+Y
Sbjct: 88  YLDDIYPETRILPTDPYEKVQQKLLLDRISGQVSPAFY 125


>L23651-11|AAA27959.1|  250|Caenorhabditis elegans Hypothetical
           protein C29E4.7 protein.
          Length = 250

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
 Frame = +1

Query: 214 MSEKHLQTGDVLPPYS-GKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWIF 390
           ++ K ++ GD  PP S G  RV+ MRFCP+AER +L + AK I  ++V +N+  K EW +
Sbjct: 6   VTSKAIRKGDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIEAEVVNLNVTDKLEWYW 65

Query: 391 NFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVE 552
               +G  PA+E+  GK + +S  I  YLD+ +PE  +  +DP  + Q K+L +
Sbjct: 66  TKHYQGKAPAVEHN-GKVVIESGFIPEYLDDAFPETRILPTDPYEKVQQKLLAD 118


>L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical
           protein C02D5.3b protein.
          Length = 246

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
 Frame = +1

Query: 295 PYAERTVLTLNAKNIPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKA-LFDSNIINV 471
           P A+R ++  + KNIP D++ ++L +KP+W F+   KG VP LE++ GK  + +S +I  
Sbjct: 28  PVAQRALIYASVKNIPSDVINVHLQEKPDWYFSKHYKGQVPTLEHDEGKKHVIESAVIPE 87

Query: 472 YLDEKYPEIPLQASDPLRRAQDKILVESFAPAQS-AYY 582
           YLD+ YPE  +  +DP  + Q K+L++  +   S A+Y
Sbjct: 88  YLDDIYPETRILPTDPYEKVQQKLLLDRISGQVSPAFY 125


>AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical
           protein K10F12.4b protein.
          Length = 123

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +1

Query: 229 LQTGDVLPPYS-GKLRVFAMRFCPYAERTVLTLNAKNIP 342
           L  G + PP + G  R+++MRFCPYA+R ++ L  KNIP
Sbjct: 85  LHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIP 123


>Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical
           protein D1053.1 protein.
          Length = 214

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
 Frame = +1

Query: 292 CPYAERTVLTLNAKNIPYDLVFINL--DQKPEWIFNFSPKGTVPALEYEPGKALFDSNII 465
           C +  R  L L  KN+ Y+   ++L  ++    +   +P   VP    + G+ + +S  I
Sbjct: 16  CSWRVRIALAL--KNVDYEYKTVDLLSEEAKSKLKEINPAAKVPTFVVD-GQVITESLAI 72

Query: 466 NVYLDEKYPEIPLQASDPLRRAQDKIL 546
             YL+E +P++PL   DP++RA  + +
Sbjct: 73  IEYLEETHPDVPLLPKDPIKRAHARAI 99


>AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical
           protein Y53G8B.1 protein.
          Length = 213

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +1

Query: 292 CPYAERTVLTLNAKNIPYDLVFINL--DQKPEWIFNFSPKGTVPALEYEPGKALFDSNII 465
           C    RT L L  K I Y+   +NL   QK +     +P   VP L+   G  L +S  I
Sbjct: 15  CSSRVRTALAL--KKIDYEYQPVNLLNKQKEQEFHGNNPAEKVPILKIN-GLTLTESMAI 71

Query: 466 NVYLDEKYPEIPLQASDPLRRAQDKIL 546
             YLDE YP+ PL   +P  +A+ + +
Sbjct: 72  IEYLDEIYPDPPLLPKEPELKARARAI 98


>AC024200-13|AAF36004.1|  214|Caenorhabditis elegans Glutathione
           s-transferase protein43 protein.
          Length = 214

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
 Frame = +1

Query: 301 AERTVLTLNAKNIPYDLVFINL---DQKPEWIF-NFSPKGTVPALEYEPGKALFDSNIIN 468
           A R  + L  KNI Y+   I+L   + K    F   +P   VP L    G +L +S  I 
Sbjct: 15  AWRVRIALALKNIDYEYRPIDLFSEESKNNAEFVKHNPAKKVPTLVIN-GLSLTESLAII 73

Query: 469 VYLDEKYPEIPLQASDPLRRAQDKI----LVESFAPAQSAYYTAAFNAQALEPSMVETY- 633
            YLDE YP+ P    +  +R+  +     +V S  P Q+       N +  EP   + + 
Sbjct: 74  EYLDEAYPDPPFLPKELDKRSYSRAIALHIVASIQPLQAINIHKMLNEK--EPGYGDFWC 131

Query: 634 ----HKGLEGLQKELETRSTKYLHG 696
               +KG   L++ L+  S KY  G
Sbjct: 132 NHFVNKGFLALEELLKKHSGKYCVG 156


>Z72502-11|CAH19081.1|  484|Caenorhabditis elegans Hypothetical
           protein C08B6.4b protein.
          Length = 484

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 250 PPYSGKLRVFAMRFCPYAERTV---LTLNAKN--IPYDLVFINLDQKPEW 384
           P  S +++ F   FC Y +       TL+ KN  +P D +F NL  +P+W
Sbjct: 370 PGESRRIKAFKW-FCGYFDTPTGPEATLSCKNMPVPLDQIFYNLSYQPDW 418


>Z72502-10|CAA96587.1|  447|Caenorhabditis elegans Hypothetical
           protein C08B6.4a protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 250 PPYSGKLRVFAMRFCPYAERTV---LTLNAKN--IPYDLVFINLDQKPEW 384
           P  S +++ F   FC Y +       TL+ KN  +P D +F NL  +P+W
Sbjct: 333 PGESRRIKAFKW-FCGYFDTPTGPEATLSCKNMPVPLDQIFYNLSYQPDW 381


>AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical
           protein T22D1.3b protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 472 YLDEKYPEIPLQASDPLRRAQDKILVESFA 561
           Y+ EK+P + + A + + RAQ K+L++  A
Sbjct: 307 YIKEKHPHVQVIAGNVVTRAQAKLLIDQGA 336


>AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical
           protein T22D1.3a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 472 YLDEKYPEIPLQASDPLRRAQDKILVESFA 561
           Y+ EK+P + + A + + RAQ K+L++  A
Sbjct: 307 YIKEKHPHVQVIAGNVVTRAQAKLLIDQGA 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,370
Number of Sequences: 27780
Number of extensions: 329491
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)