Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c16
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 29 2.6
07_01_0355 + 2597592-2598280,2599150-2599426 29 3.4
03_02_0419 - 8296314-8296448,8296546-8296711,8296799-8296902,829... 29 3.4
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 4.5
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 6.0
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672... 28 6.0
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 6.0
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 28 7.9
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 28 7.9
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 139 SSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVV 297
+SRL R+ + L M P R WFD+YK I P+ P L++
Sbjct: 146 ASRLHRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKI--PQVTCPVLII 196
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -3
Query: 212 GFIAPRLRRPSTLVNIV 162
GFIA RLRRPSTL+ ++
Sbjct: 3 GFIAGRLRRPSTLLTVL 19
>03_02_0419 -
8296314-8296448,8296546-8296711,8296799-8296902,
8297000-8297176
Length = 193
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 268 PKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLN--QSNETQTKRLVQQYDKL 441
P AR ++ ++R +L + + RA H +A ++L + E KRL++ KL
Sbjct: 32 PHLARKSIATDDVRQLLTLDHLDRA-IHRAEQVIAEDNMLEAFEMIEMYCKRLIEHAAKL 90
Query: 442 KAEGIPEDEIIEKAAQAV 495
G DEI E AA +
Sbjct: 91 DKPGECTDEIREAAASVM 108
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 361 YGLAPVSLLNQSNETQ-TKRLVQQYDKLKAEGIPEDE 468
YG+ +L QS + + KR VQ Y+K K E PE++
Sbjct: 260 YGVKVEGILRQSADVEEVKRRVQDYEKGKNEFSPEED 296
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 367 LAPVSLLNQSNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAV 495
L SLL S T + R+V +DKLK E I +DE ++ A +
Sbjct: 2075 LTKSSLLTISLNT-SGRMVGGFDKLKVEFIDQDESVQVVADTI 2116
>01_01_0863 -
6724200-6724414,6726300-6726576,6726976-6727145,
6727250-6727526
Length = 312
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 133 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY 276
+AS + R IF+ + L G + P+ FD Y F P+T P Y
Sbjct: 28 VASLSVRRYDAIFSFGDSLADTG-----NNPVVFDWYSIFDPVTRPPY 70
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +1
Query: 190 LSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKE---IRPILYKEDVLRAKFHSNG 360
L+ M RPL ++ K+ PP T + +++++ ++ + +++ ++ + +
Sbjct: 410 LALNNMDVGGRPLNVEMAKSLPPKTNLANSNLPMMMQQAVQLQQMQFQQALIMQQTIAAQ 469
Query: 361 YGLAPVSLLNQSNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQ 489
A + + + E R + KLKAEG + + EK A+
Sbjct: 470 QAAARAATMKSATEAAAARAAEISRKLKAEGFGGETVEEKDAR 512
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 119 KNFLTWPVADWKELVQYLPELKVFLAEEQ*NLMTDPCGLMYTKLSLQS 262
+ L W DW E VQ +P L+ E L P GL+Y +L++
Sbjct: 899 QGMLRWASWDWDEHVQAMPALESLTVENS-KLNRLPPGLVYHTRALKA 945
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +1
Query: 400 ETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQVLA 579
E ++ ++ Y L +E + +EKA+Q VA + Q + + PK ++ L
Sbjct: 277 EDGSREKLEPYSGLSSEESYQSRELEKASQQVAKHLYDSKVQPITLIPKQVGNMYTASLY 336
Query: 580 EADIKNIFNNK 612
A + ++ +NK
Sbjct: 337 AA-LASVMHNK 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,696
Number of Sequences: 37544
Number of extensions: 281783
Number of successful extensions: 704
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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