Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c16
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42782| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 31 1.1
SB_22797| Best HMM Match : WHEP-TRS (HMM E-Value=3.6) 30 2.0
SB_28907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 29 3.5
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 29 3.5
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10) 29 4.6
SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 8.0
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15) 28 8.0
SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 8.0
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 8.0
SB_51753| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 8.0
SB_46176| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 8.0
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022) 28 8.0
>SB_42782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = +1
Query: 133 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEIRP 312
M SR R GT+ +RV LL GA+ +P+W++V +AFPPI E K R +
Sbjct: 1 MTGSRHLR-GTVLSRVRNLLRSGALTR--KPVWYEVVEAFPPIVETKINR-RAESGRVAK 56
Query: 313 ILYKEDVLR 339
I Y ED R
Sbjct: 57 IEYPEDFFR 65
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L A F NG PV+ L+ S+ Q +R VQ
Sbjct: 91 PDVVVSDNGPNLISEE-LSAFFSKNGIQHIPVAPLHPSSNGQAERTVQ 137
>SB_22797| Best HMM Match : WHEP-TRS (HMM E-Value=3.6)
Length = 117
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 391 QSNETQTKRLVQQYD---KLKAEGIPEDEIIEKAAQAVAVERHSYAAQ 525
+ NE + +R VQ+Y KLK + E+EI+ Q + +HS A+
Sbjct: 13 KENEAKRRRAVQKYQTELKLKDQKSKEEEILAAELQQLKARKHSLEAK 60
>SB_28907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 29 IPSLDLIKKSKKRLFVCISETYLNRANNFRKNFLTWPVADWKELVQYLPELKVF 190
+ S+ ++KK +++ +CI LN+A F++N PV D +L+ L K+F
Sbjct: 460 VSSMVVVKKPNEKIRLCIDPKPLNKA--FKRNRYPLPVID--DLLPQLTNAKMF 509
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ L+ S+ Q +R VQ
Sbjct: 646 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQ 692
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ L+ S+ Q +R VQ
Sbjct: 1569 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQ 1615
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ L+ S+ Q +R VQ
Sbjct: 1037 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQ 1083
>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
Length = 517
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +1
Query: 394 SNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQV 573
S E +T + V + + EDE++ K+ + +ER+ + K+ D ++Q+
Sbjct: 183 SKEARTSQTVSTSNSVNPN--TEDELVVKSIEQTGIERNDDSVGKMASNEATKDPKSSQI 240
Query: 574 LAEADIK 594
LA + K
Sbjct: 241 LAASSDK 247
>SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 127 LNMASSRLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 285
L ++ RL GT + T ++ ++ RG + PD + YKA PP ARP
Sbjct: 738 LGYSNERLSDPGTFYPTLLKNIVIRGILPPDYPITERETYKAQPPNPPEIPARP 791
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +1
Query: 292 VVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDKLKAEGIPEDEI 471
V +EI+P K L FH + L + ++ E + +RL +QYD + + E
Sbjct: 1327 VAREIKPKREKVARLERNFHLSKRELEKIEKELKALEEELERLGKQYD----DAMREKSS 1382
Query: 472 IEKAAQAVAVERHSYAAQKL 531
+++ A+ +ER AA KL
Sbjct: 1383 LQEEAE--IMERRLIAADKL 1400
>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
Length = 385
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ
Sbjct: 131 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQ 177
>SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 145 RLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 285
RL GT + T +E ++ RG + PD + YKA PP ARP
Sbjct: 174 RLSDPGTFYPTLLENIVIRGILPPDYPITERETYKAKPPNPPKIPARP 221
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ
Sbjct: 880 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQ 926
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ
Sbjct: 422 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQ 468
>SB_51753| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 378
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ
Sbjct: 246 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQ 292
>SB_46176| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 378
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ
Sbjct: 246 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQ 292
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 283 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQ 426
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ
Sbjct: 840 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQ 886
>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
Length = 313
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 92 YLNRANNFRKNFLTWPVADWKELVQYLP 175
Y+ R +FR+ F W + W+ V LP
Sbjct: 220 YIFRMKDFRQTFFRWLIKCWRRSVPVLP 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,167
Number of Sequences: 59808
Number of extensions: 346275
Number of successful extensions: 900
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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