Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c16
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    30   1.2  
At2g31890.1 68415.m03896 expressed protein                             29   2.2  
At3g63250.2 68416.m07106 homocysteine S-methyltransferase 2 (HMT...    28   5.0  
At3g63250.1 68416.m07107 homocysteine S-methyltransferase 2 (HMT...    28   5.0  
At1g58060.1 68414.m06580 helicase domain-containing protein cont...    28   6.6  
At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containi...    28   6.6  

>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 101 RANNFRKNFLTWPVADWKELVQYLPELKV 187
           R N FRKN L  P++ W+EL      +KV
Sbjct: 486 RYNEFRKNLLMSPISKWEELTDDEEAIKV 514


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +1

Query: 367 LAPVSLLNQSNETQTKRLVQQYDKLKAEGIPEDE 468
           +A V  L +  + ++K+++ + DK+K++ IPED+
Sbjct: 155 MAEVMPLKKKKKKKSKKVIVKKDKVKSKSIPEDD 188


>At3g63250.2 68416.m07106 homocysteine S-methyltransferase 2 (HMT-2)
           99.7% identical to homocysteine S-methyltransferase
           AtHMT-2 (GI:6685163) [Arabidopsis thaliana]
          Length = 293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 379 SLLNQSNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVERHSYAA 522
           SLL +S E  T+     YDK       +D+I++K    VA    SY A
Sbjct: 53  SLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILVAASVGSYGA 100


>At3g63250.1 68416.m07107 homocysteine S-methyltransferase 2 (HMT-2)
           99.7% identical to homocysteine S-methyltransferase
           AtHMT-2 (GI:6685163) [Arabidopsis thaliana]
          Length = 333

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 379 SLLNQSNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVERHSYAA 522
           SLL +S E  T+     YDK       +D+I++K    VA    SY A
Sbjct: 93  SLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILVAASVGSYGA 140


>At1g58060.1 68414.m06580 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1459

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 325 EDVLRAKFHSNGYG--LAPVSLLNQSNETQ-TKRLVQQYDKLKAEGIPEDEI 471
           ED LR    ++G      P  + N  ++ Q TK+L   Y+KL  EG  +D+I
Sbjct: 41  EDRLRRLLLNSGRSGPSIPAPISNSLSKAQKTKKLNNVYEKLSCEGFVDDQI 92


>At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 398

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 382 LLNQSNETQTKRLVQQYDKLKAEGIPED 465
           LL  +NE ++K LV  + +LKA G+  D
Sbjct: 257 LLGLANEAKSKELVNLFGELKASGLKPD 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,854,662
Number of Sequences: 28952
Number of extensions: 252133
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)