Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c15
(426 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57847-1|AAB02266.1| 84|Homo sapiens ribosomal protein S27 pro... 165 4e-41
L19739-1|AAA59867.1| 84|Homo sapiens metallopanstimulin protein. 165 4e-41
BC070219-1|AAH70219.1| 84|Homo sapiens ribosomal protein S27 (... 165 4e-41
BC002658-1|AAH02658.1| 84|Homo sapiens ribosomal protein S27 (... 165 4e-41
AL358472-19|CAI14033.1| 84|Homo sapiens ribosomal protein S27 ... 165 4e-41
AB061845-1|BAB79483.1| 84|Homo sapiens ribosomal protein S27 p... 165 4e-41
BC003667-1|AAH03667.1| 84|Homo sapiens ribosomal protein S27-l... 160 2e-39
BC047648-1|AAH47648.1| 113|Homo sapiens RPS27L protein protein. 140 2e-33
AB007162-1|BAA25825.1| 69|Homo sapiens ribosomal protein S27 p... 135 5e-32
AL358472-18|CAI14032.1| 66|Homo sapiens ribosomal protein S27 ... 73 3e-13
BC007355-1|AAH07355.1| 287|Homo sapiens solute carrier family 2... 29 8.7
AK075249-1|BAC11497.1| 287|Homo sapiens protein ( Homo sapiens ... 29 8.7
AJ131613-1|CAB59892.1| 287|Homo sapiens dicarboxylate carrier p... 29 8.7
AJ131612-1|CAB60007.1| 287|Homo sapiens dicarboxylate carrier p... 29 8.7
>U57847-1|AAB02266.1| 84|Homo sapiens ribosomal protein S27
protein.
Length = 84
Score = 165 bits (402), Expect = 4e-41
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>L19739-1|AAA59867.1| 84|Homo sapiens metallopanstimulin protein.
Length = 84
Score = 165 bits (402), Expect = 4e-41
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC070219-1|AAH70219.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 165 bits (402), Expect = 4e-41
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC002658-1|AAH02658.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 165 bits (402), Expect = 4e-41
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>AL358472-19|CAI14033.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 165 bits (402), Expect = 4e-41
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>AB061845-1|BAB79483.1| 84|Homo sapiens ribosomal protein S27
protein.
Length = 84
Score = 165 bits (402), Expect = 4e-41
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC003667-1|AAH03667.1| 84|Homo sapiens ribosomal protein S27-like
protein.
Length = 84
Score = 160 bits (388), Expect = 2e-39
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 212
MPLA DLLHPS E++KHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCS
Sbjct: 1 MPLARDLLHPSLEEEKKKHKEKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS 60
Query: 213 TILCQPTGGRARLTEGCSFRRKQH 284
T+LCQPTGG+ARLTEGCSFRRKQH
Sbjct: 61 TVLCQPTGGKARLTEGCSFRRKQH 84
>BC047648-1|AAH47648.1| 113|Homo sapiens RPS27L protein protein.
Length = 113
Score = 140 bits (339), Expect = 2e-33
Identities = 62/77 (80%), Positives = 67/77 (87%)
Frame = +3
Query: 39 LAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTI 218
LA DLLHPS E++KHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+
Sbjct: 19 LARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTV 78
Query: 219 LCQPTGGRARLTEGCSF 269
LCQPTGG+ARLTEG SF
Sbjct: 79 LCQPTGGKARLTEGISF 95
>AB007162-1|BAA25825.1| 69|Homo sapiens ribosomal protein S27
protein.
Length = 69
Score = 135 bits (327), Expect = 5e-32
Identities = 58/69 (84%), Positives = 62/69 (89%)
Frame = +3
Query: 48 DLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQ 227
DLLHPSP E+RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQ
Sbjct: 1 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 60
Query: 228 PTGGRARLT 254
PTGG+ARLT
Sbjct: 61 PTGGKARLT 69
>AL358472-18|CAI14032.1| 66|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 66
Score = 73.3 bits (172), Expect = 3e-13
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +3
Query: 33 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPG 149
MPLA DLLHPSP E+RKHK KRLV PNSYFMDVKCPG
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPG 39
>BC007355-1|AAH07355.1| 287|Homo sapiens solute carrier family 25
(mitochondrial carrier; dicarboxylate transporter), me
protein.
Length = 287
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 153 YKITTVFSHAQRVVVCAGCSTILCQP 230
Y +F+H + GC+T LCQP
Sbjct: 194 YLSDNIFTHFVASFIAGGCATFLCQP 219
>AK075249-1|BAC11497.1| 287|Homo sapiens protein ( Homo sapiens
cDNA FLJ90768 fis, clone THYRO1000795, highly similar to
Mitochondrial dicarboxylate carrier. ).
Length = 287
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 153 YKITTVFSHAQRVVVCAGCSTILCQP 230
Y +F+H + GC+T LCQP
Sbjct: 194 YLSDNIFTHFVASFIAGGCATFLCQP 219
>AJ131613-1|CAB59892.1| 287|Homo sapiens dicarboxylate carrier
protein protein.
Length = 287
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 153 YKITTVFSHAQRVVVCAGCSTILCQP 230
Y +F+H + GC+T LCQP
Sbjct: 194 YLSDNIFTHFVASFIAGGCATFLCQP 219
>AJ131612-1|CAB60007.1| 287|Homo sapiens dicarboxylate carrier
protein protein.
Length = 287
Score = 28.7 bits (61), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 153 YKITTVFSHAQRVVVCAGCSTILCQP 230
Y +F+H + GC+T LCQP
Sbjct: 194 YLSDNIFTHFVASFIAGGCATFLCQP 219
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,016,812
Number of Sequences: 237096
Number of extensions: 1238973
Number of successful extensions: 3043
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -