Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c14
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.40 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   0.70 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   1.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   3.7  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   3.7  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   6.5  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.5  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   6.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  CHIWFDTPAPFFSRYHTQTQ 136
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 259
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 421 FLLNDKVIYLQNSNKNKLFELSGL 350
           FL   +V+YL ++NK + FELS +
Sbjct: 374 FLQQSRVLYLFHANKQRHFELSDI 397


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 301
           H QK + P     P++QNT      H THP   +   SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 319 TVESQTRAGDEIASFLRYC 263
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 116 RYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKP 211
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 249 CLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV 151
           CLA +  +F       + GSWIF   ++ PGG+
Sbjct: 354 CLASSREIFAFARDKGLPGSWIF--RKLTPGGI 384


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 122 HTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTV 268
           H     + ++   G   H+ KI  P + +PP   + L +     THPT+
Sbjct: 578 HLSAYAISIRMKDGQIRHLAKIISPCVLRPP---DDLNIIPVEDTHPTL 623


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 379 KNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASF 275
           KNKL + S + L SC    +   S TR   + +S+
Sbjct: 78  KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,134
Number of Sequences: 5004
Number of extensions: 29677
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)