Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c13
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi... 124 2e-29
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi... 120 2e-28
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo... 119 5e-28
At5g16940.1 68418.m01985 expressed protein contains Pfam profile... 29 1.2
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai... 29 1.2
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 27 2.8
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 27 2.8
At4g00450.1 68417.m00062 expressed protein 27 5.0
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 27 5.0
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 24 5.2
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 26 6.6
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 26 6.6
At1g62220.1 68414.m07018 expressed protein 26 6.6
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 26 6.6
At5g64260.1 68418.m08073 phosphate-responsive protein, putative ... 26 8.7
At4g21840.1 68417.m03158 methionine sulfoxide reductase domain-c... 26 8.7
At4g21830.1 68417.m03157 methionine sulfoxide reductase domain-c... 26 8.7
>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
to SP:Q43292 from [Arabidopsis thaliana]
Length = 95
Score = 124 bits (299), Expect = 2e-29
Identities = 57/94 (60%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
MTKGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVASS 307
MR+L+ V RRF+ GF+EG P+ K VASS
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASS 94
>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
Length = 95
Score = 120 bits (290), Expect = 2e-28
Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVASS 307
MR+L+ V RRF+ GF+EG P+ KA ASS
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASS 94
>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
identical to GB:Q43292
Length = 95
Score = 119 bits (287), Expect = 5e-28
Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 307
MR+L+ V RRF+ F+EG + TP KA ASS
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASS 94
>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
PF04828: Protein of unknown function (DUF636)
Length = 135
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 5 FRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKS 124
F ++ K T +FG K HT C+ CG +S++I +S
Sbjct: 52 FELLDDSKDFITTYTFGTHTAK-HTFCKVCGITSFYIPRS 90
>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain
Length = 215
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 77 TLCRRCGRSSYHIQK-SKCAQCGY 145
T C RCG +YH Q + C CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 26 KMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 139
K+ + T+S +R+ K + C RCG++ + K C C
Sbjct: 157 KVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 26 KMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 139
K+ + T+S +R+ K + C RCG++ + K C C
Sbjct: 157 KVHECTASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 83 CRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVK 184
CRR R + +KS C Q P A +W +K
Sbjct: 788 CRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIK 821
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Frame = +2
Query: 65 NKTHT-LCRRCGRSS---YHIQKSKCAQCG 142
NKT LC CGR YH KC CG
Sbjct: 219 NKTQVILCNDCGRKGNAPYHWLYHKCTTCG 248
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 24.2 bits (50), Expect(2) = 5.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 90 DVVDRHITFKNQNAPNVDILQ 152
D+ RHI+FK + P+V I Q
Sbjct: 1047 DIELRHISFKYPSRPDVQIFQ 1067
Score = 20.6 bits (41), Expect(2) = 5.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 138 VDILQQNYDPTTGQ 179
+ +LQ+ YDP +GQ
Sbjct: 1093 IALLQRFYDPDSGQ 1106
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 56 KRRNKTHTLCRRCGRSSYHI----QKSKCAQCG 142
K +K H +C RC +S+ + K C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 801
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 56 KRRNKTHTLCRRCGRSSYHI----QKSKCAQCG 142
K +K H +C RC +S+ + K C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183
>At1g62220.1 68414.m07018 expressed protein
Length = 153
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +3
Query: 84 AEDVVDRHITFKNQNAPNVDILQQNYDPTTGQ*RLSAGRLLELAACVI*RLSGGASVMVL 263
+ DV F N P+ + + Y T+GQ ++ GR +++ G A V
Sbjct: 58 SSDVYSSATGFNNPKGPDANAYENGYTSTSGQ-VIAKGRKARVSSASASTAKGDAKAAVT 116
Query: 264 KKGNQRR 284
+K R
Sbjct: 117 RKAAAAR 123
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 74 HTLCRRCGRSSYHIQKSKCAQCG 142
H C++C + S I+ KC CG
Sbjct: 348 HLFCQQCIQRSLEIRHRKCPGCG 370
>At5g64260.1 68418.m08073 phosphate-responsive protein, putative
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 305
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 236 VRRRFRNGFKEGKPTPPKKAVAS 304
V F NG+ +G PT P +AV++
Sbjct: 229 VTNPFNNGYYQGPPTAPLEAVSA 251
>At4g21840.1 68417.m03158 methionine sulfoxide reductase
domain-containing protein / SelR domain-containing
protein weak similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 2 LFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 151
+ R+ +DK KG F K+ + C CG + Y + CG+PA
Sbjct: 32 VLRLKGTDKRGKG--EFTKKFEEGTYSCAGCGTALYKSTTKFDSGCGWPA 79
>At4g21830.1 68417.m03157 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 144
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 2 LFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 151
+ R+ +DK KG F K+ + C CG + Y + CG+PA
Sbjct: 33 VLRLKGTDKRGKG--EFTKKFEEGTYSCAGCGTALYKSTTKFDSGCGWPA 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,329,211
Number of Sequences: 28952
Number of extensions: 135363
Number of successful extensions: 311
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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