Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c12
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.46 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   1.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   3.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   3.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   4.3  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    23   9.8  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.46
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 102 WLLARSKFLIPNILF*YNYSSKCSLKFFY 16
           W+LAR KF   N    YNYS+K  +  F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 136 HVPLLSDILKDLVVSAK*IPNSKHF 62
           HVP+ +DI    +V  K   N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 157  WRSADNAHVPLLSDILKDLVVS 92
            WRSAD+ H+P ++  L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 112 ECRST-KEHERYLHSAKKQGFQR 177
           +CR+    H RYL SAKK G  R
Sbjct: 20  QCRNKYHSHVRYLSSAKKSGILR 42


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 72  ELGIYFALTTKSLRMSLNKGT 134
           E G+ F+L++KSLR+S  KGT
Sbjct: 70  ERGV-FSLSSKSLRLSNRKGT 89


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -3

Query: 286 FVIILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDILK 107
           + I L  +   LDVD  P      A      +  ++T G    WR A NA   LL    K
Sbjct: 156 YTITLSHIFGKLDVDSLPPITESKAIELSPSDAPYITKGLTQCWRLA-NATTLLLRKAEK 214

Query: 106 D 104
           D
Sbjct: 215 D 215


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 238 HPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDILK 107
           +P  DS P       E  H  S  +    SA     P+LSD+ K
Sbjct: 822 NPSLDSEPVQLSNMEEPQHQDSSVVDVSTSASQRGSPVLSDLSK 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,567
Number of Sequences: 5004
Number of extensions: 24910
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)