Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c12
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0808 + 11412981-11413259 29 1.3
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 28 2.2
08_01_0034 - 253972-254916 27 2.9
06_01_1160 - 9868340-9868360,9868639-9868986 27 3.9
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 27 3.9
03_05_0733 - 27241021-27241767 27 3.9
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 26 6.7
01_05_0168 - 18865821-18866843 26 6.7
12_01_0258 - 1900564-1901101,1901838-1902004 26 8.9
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 26 8.9
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139... 26 8.9
>03_02_0808 + 11412981-11413259
Length = 92
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 74 IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 178
+R +LR N + +F QQR M + PPR K G
Sbjct: 50 VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 280 IILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSA----DNAHVPLLSDI 113
+ +L+ ++LDV+ P W + AGE ++ R A NA VP+ S++
Sbjct: 330 LFAVLMQMLLDVEDDPAWHTAETEDEDAGEGNNYGVAQECLDRLAIAIGGNAIVPIASEL 389
Query: 112 L 110
L
Sbjct: 390 L 390
>08_01_0034 - 253972-254916
Length = 314
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -3
Query: 250 DVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDILKDLVVSAK 86
D+D+ + AH E HL G L S A + L D+ D+V K
Sbjct: 251 DLDRVVATGTGYAHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRK 305
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 89 RANNQIFKNVAQQRNMSVICTPPRNK 166
+A Q+ + A RNM VICT P K
Sbjct: 84 QAGRQVGRRPASIRNMRVICTTPNYK 109
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 205 HQAGEEDHLTSGNL 164
HQ EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365
>03_05_0733 - 27241021-27241767
Length = 248
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 265 VAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVS 158
+AV DV G+ +R H H DHL G+LV+
Sbjct: 56 LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 280 IILLLVAVMLDVDQHPGWDSRPAHHHQAGE 191
+ +L+ ++LDV P W + + AGE
Sbjct: 320 LFAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349
>01_05_0168 - 18865821-18866843
Length = 340
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 197 GLMVVGWSAIPAWVL-VNIKHYRDK 268
G+ + GW+ +P W L + + HY K
Sbjct: 161 GITMKGWAVVPRWKLRLRVSHYLRK 185
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 229 WDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 128
W + AH +A E D + + R A HVP
Sbjct: 28 WKAEAAHERRAAERDAMDGMGMGGTREAGADHVP 61
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 118 RSTKEHERYLHSAKKQGFQR*DDLPRRPDGGGLVCY 225
R TK ++ AK DD+ RP GGLV Y
Sbjct: 645 RRTKHAQKQDGGAKLTNGSEADDVSSRPKSGGLVDY 680
>01_02_0069 -
10813467-10813475,10813476-10813564,10813865-10813988,
10814227-10814305,10815298-10815388,10815808-10815904,
10816197-10816241,10816369-10816464
Length = 209
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 116 VAQQRNMSVICTPPRNKVSRGEMIFLAGL 202
+A++ + ++C PPR G MI G+
Sbjct: 158 IAEKNGLQLVCPPPRLCTDNGVMIAWTGI 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,558,622
Number of Sequences: 37544
Number of extensions: 159050
Number of successful extensions: 362
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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