Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c11
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    33   0.054
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    31   0.12 
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    29   0.88 
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   2.0  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 590 IQKLEKLNVISDERKNNRTMTTISVQKILETVLSITN 700
           ++K  +L+  +D  KNN+T     +QK+L TV S TN
Sbjct: 104 LEKFPELSYFNDAVKNNKTKALSIIQKLLSTVDSSTN 140


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 375 LQRLTPPSLYNLNPICKIYQICVIGVELIVSTQVLVSTSCIYYVYVYTLRGDLHSF---- 208
           L  LTPPS         IYQ C++G   +V+  V + T    Y+Y+     +   F    
Sbjct: 287 LPDLTPPSYNIAKTFASIYQECLVG---LVTKAVSLDTPAAVYLYLINFHREYRKFFEEN 343

Query: 207 -PYTIESV 187
            P++++ V
Sbjct: 344 APFSVDEV 351


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 264 TSCIYYVYVYTLRGDLHSFPYTIESVV 184
           T+C+YY  +Y   GD H F    + VV
Sbjct: 268 TNCLYYAVIYLAPGDYHRFHSPTDWVV 294


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 VYVYTLRGDLHSFPYTIESVVV 181
           VY+Y +R  LHSF YT  SV+V
Sbjct: 514 VYIYAVR--LHSFYYTFRSVLV 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,641
Number of Sequences: 5004
Number of extensions: 47362
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)