Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c11
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)                   29   3.8  
SB_41464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
          Length = 1826

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 89  LVASYY*KCTIFIL*YNIIIYSDYRYRPTIHTTTDSMV*GKE*RSPLRV-YTYT*YIQDV 265
           L A +Y   TI++  YN++      Y   +H T  ++V   +  +   +  T+T  I D 
Sbjct: 400 LAAPWYETYTIYVTAYNLVSNVTKAYTAIVHKTVKNLVLTNDGPTKQNLTMTFTLTIGDF 459

Query: 266 DTNTC 280
            T+TC
Sbjct: 460 GTDTC 464


>SB_41464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 303 GVELIVSTQVLVSTSC-IYYVYVYTLRGDL 217
           GV++I+STQV +   C +Y+V +  ++ DL
Sbjct: 36  GVQMIMSTQVALQVVCYVYFVILIDIKDDL 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,321
Number of Sequences: 59808
Number of extensions: 296016
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)