Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c08
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    37   0.013
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    33   0.21 

>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 89  HWQQLKDWLYQLMFRLLMKLGTDILGSVQSKIMKTLDVIHECFPAELQLHNIFRFLSD 262
           H  +L +WL   + +L  +   + L + + +I  TL+VI ECF A  QL  +   + D
Sbjct: 347 HSSRLSEWLRLALAKLFARKAAETLPNTKKQIGHTLNVILECFNAHHQLVTVCELMCD 404


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
            protein C07H6.3 protein.
          Length = 1378

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 92   WQQLKDWLYQLMFRLLMKLGTDILGSVQSKIMKTLDVIHECFPAELQLHNIFRFLSD 262
            +++L +WL   + +L  K+G D L +V+S +  T  +    F    QL  +  F+ D
Sbjct: 899  YKKLDNWLKLALGKLFAKMGADALPNVKSALSSTQKMFLTTFDPTFQLKAVCDFMCD 955


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,562,129
Number of Sequences: 27780
Number of extensions: 97657
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)