Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c07
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.1  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   4.2  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 566 LILPIRVFWLLWTNILGPWFFQEAP 640
           ++ PI +FWL WT    PW     P
Sbjct: 394 IVFPIGIFWLAWTGNY-PWIHWIVP 417


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 454 FRFEHGGWNGRTYQGYCNTLIYNSSFSIDKQLLLAIASNFTNKSILAIVDQYTWSLVF 627
           F+ E+  W+     G   T++ N + S D  + +    + +NK  +++   +T  L+F
Sbjct: 512 FQVEYSSWSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGSNKKYMSLRQHFTAVLLF 569


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +2

Query: 266 RNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIH 379
           +N+  +A+ F  +   + YY     W++ F ++++++H
Sbjct: 81  KNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVMLH 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,452
Number of Sequences: 5004
Number of extensions: 60474
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)