Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c07
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)       31   0.83 
SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)
          Length = 510

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +2

Query: 437 QLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLL 568
           ++LD  +  N +GGM  H+K ++  S +  V+A+ ++  + +L+
Sbjct: 225 RILDTVISANFDGGMPIHMKSVLQCSVLVDVIAICDSILYKVLI 268


>SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 506 ILSSITQVLALINNYFWLLLLILPIRVFWLLWTNILG 616
           +L  +  VLALIN    L L ++P +V W +W  +LG
Sbjct: 467 LLGRLALVLALINICLGLFLAVVP-QVAWTVWYAVLG 502


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 112 FQKLFCTYFEIN*YFSPLCSGLHYGT 189
           FQ L C    I    + LCS LH+GT
Sbjct: 327 FQPLLCLVHSIQGLLTFLCSALHFGT 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,106
Number of Sequences: 59808
Number of extensions: 408663
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)