Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c07
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 253 CGSIFYKDLFGTFCRRFSFGGWCHSG 176
           C + F    + T   R +FG W HSG
Sbjct: 169 CATDFSSWPYDTHRCRINFGSWVHSG 194


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 137 K*VQNNF*KSVTINYR*HFYS*NSNYDLSTRNIDLYIFI 21
           K + NN   S   NY  ++ + N+NY+ + + +  Y  I
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNII 118


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 385 SNVYNQYQNIKKEYPI*YV 329
           +N YN Y N K  Y I Y+
Sbjct: 315 NNNYNNYNNKKLYYNINYI 333


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 174 TPLWHQPPKENRLQKVPNK 230
           +P +HQ P +N    VP++
Sbjct: 628 SPHFHQSPSQNHSSAVPDQ 646


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 485 RPFHPPCSNLNL 450
           RP HPP S+ +L
Sbjct: 92  RPLHPPASSTSL 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,960
Number of Sequences: 438
Number of extensions: 4633
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)