Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c06
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   1.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   5.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
 Frame = +2

Query: 179 RGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLS 358
           RG K  +  KE + E ++ + KIK    + VK +++ +     P+ L+    + R K LS
Sbjct: 175 RGTKIVLHMKEDQTEFLE-EHKIK----EIVKKHSQFIG---YPIKLVVE--KEREKELS 224

Query: 359 N-MIKQKRKEKAGK-WDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTK 505
           +   ++++KE+ G+  D   PK+    + E     K  K K+K  K   T+
Sbjct: 225 DDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTE 275


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 279 TQRRSPKVPCLFIYWTGMFN 338
           T+ ++ K+ C F  W G  N
Sbjct: 19  TEAKTDKILCFFASWAGYRN 38


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +2

Query: 458 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHV 598
           KS K   K W+R++    FV        PK +  ++ + +   + H+
Sbjct: 580 KSAKPMLKPWQRVLPDGVFVAFLLKHIVPKLQLCMQNLVINPHQQHL 626


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 69  YSFCGMLVAYSATYAVTIPQ 10
           ++FC M++A   TY V + Q
Sbjct: 352 WTFCHMMIAALTTYLVILIQ 371


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 205 IEYFSFDTAEFARLFSAFMRLTSFTLPFS 119
           I  F  D  EFA L +  +  TSF  P S
Sbjct: 287 ISQFQLDAHEFACLRAIVLFKTSFEKPSS 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,135
Number of Sequences: 336
Number of extensions: 2928
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)