BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10c06 (728 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 283 8e-77 03_02_0189 - 6253659-6255380 32 0.54 09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 31 0.94 04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 30 1.6 05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 3.8 11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 29 5.0 02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 5.0 01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 5.0 08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 8.7 02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 8.7 >07_03_1651 - 28395369-28395436,28395524-28395575,28395857-28396092, 28396362-28396419,28396509-28396577,28396686-28396791, 28397104-28397171,28397266-28397385,28398144-28398231, 28399433-28399534,28399699-28399757,28399866-28400003, 28400222-28400473,28400508-28400593,28401061-28401165, 28402351-28402516 Length = 590 Score = 283 bits (695), Expect = 8e-77 Identities = 137/224 (61%), Positives = 159/224 (70%) Frame = +2 Query: 56 PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 235 PQ ++IE HQK +GRRLDY L G K K F K+R EK QM Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392 Query: 236 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 415 KK +K H+E + + V EGALP YLLDRD RAKVLSN IKQKR EKAGKW+VP+P Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452 Query: 416 KVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAH 595 KVR A+ E+FKVL++GK K K WKRMVTK TFVG FTRKPPK+ERFIRP LRF KAH Sbjct: 453 KVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAH 512 Query: 596 VTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISE 727 VTHPELK TF L II VKKNP+ QMY++LGV+T+GT+IEVN+SE Sbjct: 513 VTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRGTIIEVNVSE 556 >03_02_0189 - 6253659-6255380 Length = 573 Score = 31.9 bits (69), Expect = 0.54 Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Frame = +2 Query: 359 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV--LKSGKSKRKAWKRMVTKVTFVGENFT 532 N ++ +KEKA + P P RA A KV S +K K V K T + Sbjct: 68 NKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESL 127 Query: 533 RKPPKFERFIRPMAL--RFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 685 FE P L R K ++ P + +PII K + Q YT G Sbjct: 128 FSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSG 180 >09_06_0132 - 21042653-21042873,21042950-21043027,21043106-21043167, 21043504-21043578,21043664-21043752,21043825-21043905, 21044939-21045076,21046299-21046429,21046521-21046592, 21047218-21047275,21047362-21047461,21047544-21047617, 21047701-21047836,21047913-21048137,21048211-21048446, 21048949-21049081,21049195-21049484 Length = 732 Score = 31.1 bits (67), Expect = 0.94 Identities = 22/83 (26%), Positives = 34/83 (40%) Frame = -3 Query: 642 PIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 463 PII AF+ A + + L+ + + GL+V F + L F + FD Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448 Query: 462 DFRTLNTSASAWALTLGMGTSHF 394 +N S SA G+G S + Sbjct: 449 SRLPVNPSPSAVPSKPGLGPSSY 471 >04_04_1253 + 32097840-32097963,32098154-32098329,32098413-32098622, 32098720-32098879,32098993-32099212,32099288-32099438 Length = 346 Score = 30.3 bits (65), Expect = 1.6 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Frame = +2 Query: 290 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 457 VA GA P +D V + +++ M K EKA W +P+ + AE+F Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260 Query: 458 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550 + S R + T VT + K P++ Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291 >05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 Length = 271 Score = 29.1 bits (62), Expect = 3.8 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +2 Query: 281 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 442 TE++ EG + L D++ + +M+K KEK K P P++ +A AE Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184 >11_05_0069 - 18814789-18815326,18815742-18816001,18816077-18816631, 18816907-18817062 Length = 502 Score = 28.7 bits (61), Expect = 5.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 708 ITVPLVMTPKLVYICELGFFLTPIIGK 628 +TV L+MTP +++ + F L +IGK Sbjct: 71 LTVSLIMTPLALFVAFVSFHLAALIGK 97 >02_05_0492 - 29476883-29476949,29477030-29477166,29477292-29477383, 29477490-29477587,29477677-29477804,29477883-29478026, 29478108-29478397,29478553-29478739,29479085-29479210, 29480488-29480538,29480952-29481002,29482639-29484054 Length = 928 Score = 28.7 bits (61), Expect = 5.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +2 Query: 305 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 466 LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219 >01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 Length = 152 Score = 28.7 bits (61), Expect = 5.0 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +2 Query: 422 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 568 + Q +V K +KSG KRK+ K++ T VTF +K PK+ R P Sbjct: 13 KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62 >08_02_0580 - 18953208-18953513,18953668-18953868,18953929-18954009, 18954096-18954410,18954493-18954636,18954733-18954822, 18954907-18954983,18955122-18955182,18955264-18955490, 18955581-18955740,18955825-18956025,18956114-18956209, 18956380-18956565,18956641-18956810,18957044-18957275, 18958652-18959029 Length = 974 Score = 27.9 bits (59), Expect = 8.7 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Frame = -2 Query: 265 LLFVRFDFLFHLNLFIAAFLIEYF-----SFDTAEFARLFSAFMR--LTSFTLPFS 119 +LF+ F FLF LN+ AF+I F S T FA F+ +T+F P+S Sbjct: 310 ILFLLF-FLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYS 364 >02_05_0064 - 25529630-25531440,25531663-25531673,25533113-25533198, 25533412-25534259,25535385-25535736 Length = 1035 Score = 27.9 bits (59), Expect = 8.7 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 4/141 (2%) Frame = +2 Query: 275 HNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV 454 H+ + V + + P+ L +VQ N ++ +KE+A + P RA A KV Sbjct: 509 HDIQTVEDKSGPLTLASLEVQ-------NKVEYVKKERATRTGGIKPSSRASALNMKPKV 561 Query: 455 LK-SGKSKRKAW-KRMVTKVTFVGENFTRKPPKFERFIRPMAL--RFKKAHVTHPELKAT 622 + K + A K V K T + FE P L R K +T P + Sbjct: 562 SSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQS 621 Query: 623 FCLPIIGVKKNPSSQMYTSLG 685 +PII K + Q YT G Sbjct: 622 AAIPIISQKHDAVIQSYTGSG 642 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,409,185 Number of Sequences: 37544 Number of extensions: 301742 Number of successful extensions: 804 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 801 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1909952136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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