SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c06
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...   283   8e-77
03_02_0189 - 6253659-6255380                                           32   0.54 
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431...    31   0.94 
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986...    30   1.6  
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     29   3.8  
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166...    29   5.0  
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773...    29   5.0  
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     29   5.0  
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    28   8.7  
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331...    28   8.7  

>07_03_1651 - 28395369-28395436,28395524-28395575,28395857-28396092,
            28396362-28396419,28396509-28396577,28396686-28396791,
            28397104-28397171,28397266-28397385,28398144-28398231,
            28399433-28399534,28399699-28399757,28399866-28400003,
            28400222-28400473,28400508-28400593,28401061-28401165,
            28402351-28402516
          Length = 590

 Score =  283 bits (695), Expect = 8e-77
 Identities = 137/224 (61%), Positives = 159/224 (70%)
 Frame = +2

Query: 56   PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 235
            PQ ++IE HQK +GRRLDY                     L G K K F K+R  EK QM
Sbjct: 333  PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392

Query: 236  KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 415
            KK +K H+E   +   + V EGALP YLLDRD   RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393  KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452

Query: 416  KVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAH 595
            KVR  A+ E+FKVL++GK K K WKRMVTK TFVG  FTRKPPK+ERFIRP  LRF KAH
Sbjct: 453  KVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAH 512

Query: 596  VTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISE 727
            VTHPELK TF L II VKKNP+ QMY++LGV+T+GT+IEVN+SE
Sbjct: 513  VTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRGTIIEVNVSE 556


>03_02_0189 - 6253659-6255380
          Length = 573

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
 Frame = +2

Query: 359 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV--LKSGKSKRKAWKRMVTKVTFVGENFT 532
           N ++  +KEKA +   P P  RA A     KV    S  +K    K  V K T   +   
Sbjct: 68  NKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESL 127

Query: 533 RKPPKFERFIRPMAL--RFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 685
                FE    P  L  R  K  ++ P    +  +PII  K +   Q YT  G
Sbjct: 128 FSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSG 180


>09_06_0132 -
           21042653-21042873,21042950-21043027,21043106-21043167,
           21043504-21043578,21043664-21043752,21043825-21043905,
           21044939-21045076,21046299-21046429,21046521-21046592,
           21047218-21047275,21047362-21047461,21047544-21047617,
           21047701-21047836,21047913-21048137,21048211-21048446,
           21048949-21049081,21049195-21049484
          Length = 732

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/83 (26%), Positives = 34/83 (40%)
 Frame = -3

Query: 642 PIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 463
           PII     AF+      A +    + L+  + + GL+V F    + L    F  + FD  
Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448

Query: 462 DFRTLNTSASAWALTLGMGTSHF 394
               +N S SA     G+G S +
Sbjct: 449 SRLPVNPSPSAVPSKPGLGPSSY 471


>04_04_1253 +
           32097840-32097963,32098154-32098329,32098413-32098622,
           32098720-32098879,32098993-32099212,32099288-32099438
          Length = 346

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +2

Query: 290 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 457
           VA GA P   +D  V +   +++     M   K  EKA  W +P+  +     AE+F   
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260

Query: 458 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
           +   S R     + T VT +      K P++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 281 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 442
           TE++ EG   + L   D++   +   +M+K   KEK  K   P P++  +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184


>11_05_0069 -
           18814789-18815326,18815742-18816001,18816077-18816631,
           18816907-18817062
          Length = 502

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 708 ITVPLVMTPKLVYICELGFFLTPIIGK 628
           +TV L+MTP  +++  + F L  +IGK
Sbjct: 71  LTVSLIMTPLALFVAFVSFHLAALIGK 97


>02_05_0492 -
           29476883-29476949,29477030-29477166,29477292-29477383,
           29477490-29477587,29477677-29477804,29477883-29478026,
           29478108-29478397,29478553-29478739,29479085-29479210,
           29480488-29480538,29480952-29481002,29482639-29484054
          Length = 928

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 305 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 466
           LP+Y +DRD  +   +LS + +  R + A +  +P+ +  A  + DA+ + +L  G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 422 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 568
           + Q   +V K +KSG  KRK+ K++ T VTF      +K   PK+ R   P
Sbjct: 13  KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62


>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -2

Query: 265 LLFVRFDFLFHLNLFIAAFLIEYF-----SFDTAEFARLFSAFMR--LTSFTLPFS 119
           +LF+ F FLF LN+   AF+I  F     S  T  FA     F+   +T+F  P+S
Sbjct: 310 ILFLLF-FLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYS 364


>02_05_0064 -
           25529630-25531440,25531663-25531673,25533113-25533198,
           25533412-25534259,25535385-25535736
          Length = 1035

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
 Frame = +2

Query: 275 HNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV 454
           H+ + V + + P+ L   +VQ       N ++  +KE+A +     P  RA A     KV
Sbjct: 509 HDIQTVEDKSGPLTLASLEVQ-------NKVEYVKKERATRTGGIKPSSRASALNMKPKV 561

Query: 455 LK-SGKSKRKAW-KRMVTKVTFVGENFTRKPPKFERFIRPMAL--RFKKAHVTHPELKAT 622
              + K  + A  K  V K T   +        FE    P  L  R  K  +T P    +
Sbjct: 562 SSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQS 621

Query: 623 FCLPIIGVKKNPSSQMYTSLG 685
             +PII  K +   Q YT  G
Sbjct: 622 AAIPIISQKHDAVIQSYTGSG 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,185
Number of Sequences: 37544
Number of extensions: 301742
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -