Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c05
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    79   7e-16
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    50   2e-07
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    42   8e-05
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    31   0.11 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.4  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   7.2  

>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
 Frame = +1

Query: 46  STAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTI--SVITNENIL 219
           S  FC+ CG++L       +  C  C++ Y ++ ++NL  +     +    ++    +I+
Sbjct: 6   SLIFCSECGNLLESTTA-QWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIV 64

Query: 220 HTDGP--EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 378
             +    E   +E KC KCG D M++ TLQLRSADEG TVFY C +C YK + N+
Sbjct: 65  QVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = +1

Query: 55  FCARCGS-ILPLLQEFG--FVKCYTCKAHYEADNYSNLKFQYTIHFNTISVITNENILHT 225
           FC  CG+ ++  + E G     C TC  H+    +   + ++        V+  E    +
Sbjct: 3   FCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFA-QKEVDDVLGGEEAFES 61

Query: 226 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 375
           +       E    KC  +R  +  LQ+RSADE  + FY C KCK++  EN
Sbjct: 62  NQQTEVTCEN--TKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 199 ITNENILHTDG--PEGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
           +  EN+ H  G  P+  V +   C KC   ++SY  +Q RSADE  T F  C  C
Sbjct: 232 LEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = +1

Query: 55  FCARCGSIL-PLLQEFGFVKCYTCK-AHYEADNYSNLKFQYTIHFNTISVITNENILHTD 228
           +C  C ++L P   +   V    C+   Y     ++  +++ +  + +   T  +   TD
Sbjct: 6   YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD 65

Query: 229 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 360
            P  P  +++C +C      +     R  D   T+ Y C+ C +
Sbjct: 66  -PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF 108


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 40  STSTAFCARCGSILPLLQEFGFVKCYTC 123
           S    +CA CG  LPL ++  F KC  C
Sbjct: 488 SLGAQWCAHCGFFLPLRRKDCF-KCVEC 514


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 316 RPIVTVELHMTFCRNRILRIFSPQLDPQDHQYVV 215
           RP V    H   CR+      S +LDP+D  YVV
Sbjct: 175 RPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,414
Number of Sequences: 5004
Number of extensions: 54542
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)