Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c05
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446...    57   1e-08
07_01_0873 - 7257016-7257957,7260083-7260262                           46   3e-05
03_06_0445 - 33982018-33982965,33984308-33984463                       46   3e-05
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806...    33   0.15 
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136...    29   3.2  
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783...    29   4.2  
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166...    28   5.6  
04_04_1453 + 33710202-33710516                                         28   7.4  

>03_05_0889 +
           28543106-28543354,28544379-28544465,28544548-28544604,
           28544704-28544781
          Length = 156

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 235 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 375
           E   V ++C KC    + Y T QLRSADEGQTVFY C  C+++  EN
Sbjct: 109 ERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 155


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 232 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
           P+    + KC +CG  + +Y  LQ RSADE  T F TC+ C
Sbjct: 326 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 232 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
           P+    + KC +CG  + +Y  LQ RSADE  T F TC+ C
Sbjct: 320 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360


>02_05_0276 +
           27378994-27380094,27380185-27380250,27380586-27380660,
           27381927-27382025,27382353-27382436,27382519-27382868,
           27383190-27383406,27383579-27383658,27383760-27383850,
           27386544-27386672,27388771-27388858,27389967-27390097
          Length = 836

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 241 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK--CKYKETEN 375
           P     C +C      Y  +Q+RSADE  + FY C +  C++   E+
Sbjct: 790 PKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRED 836


>07_03_0336 +
           16911947-16912144,16912636-16912692,16912917-16913696,
           16914666-16914713,16914795-16916032,16916776-16916860,
           16917323-16917379
          Length = 820

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 305 NCRVAYDILS*PHFAHFLSTTGPSGPSVCSIFSFVITDIVLKCIVY 168
           NC+    ++   HF H     GP+G  +C +F F + D +LK + Y
Sbjct: 120 NCKCIIQLID--HFKH----AGPNGQHICLVFEF-LGDSLLKLVQY 158


>07_03_0724 +
           20975942-20976867,20977397-20977476,20977976-20978370,
           20988410-20989444
          Length = 811

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 272 PHFA-HFLSTTGPSGPSVCSIFSFV 201
           PH A HF + TG   P VC  FSF+
Sbjct: 504 PHMARHFTNATGRGMPLVCPTFSFL 528


>01_03_0288 -
           14714953-14715253,14716317-14716402,14716573-14716686,
           14716771-14717140,14717224-14717357,14717512-14717617,
           14717733-14717854,14718125-14718231,14718522-14718622,
           14719007-14719169,14719559-14719614,14720833-14721152
          Length = 659

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 16  IMSTESPLSTSTAFCARCGSILPLLQEFGFV 108
           I +  SP  T  +F     S+LPLL EFG +
Sbjct: 224 IQNNTSPQDTLESFSDSLSSMLPLLSEFGHI 254


>04_04_1453 + 33710202-33710516
          Length = 104

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 228 WS*GSSCGEKMRKMRLRQNVICNSTVTIGR*R 323
           W+ G    E+  + RLR+   C  TV +GR R
Sbjct: 10  WNGGGGWRERRARQRLRRRQYCGGTVWLGRRR 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,956
Number of Sequences: 37544
Number of extensions: 283047
Number of successful extensions: 578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)