Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c05
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           30   1.9  
SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)                 28   5.7  

>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 181 NVLCIEISGYYNYQPHNVLYKCSISRSQTLVARVIWTHSERKTL 50
           N  C    G++      + Y C  S +  L+ RVI+T S  +T+
Sbjct: 635 NYACATDDGFHRLSASYIPYLCCFSSATDLICRVIFTTSPNRTV 678


>SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)
          Length = 499

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 160 SGYYNYQPHNVLYKCSISRSQTLVARVIWTHSERKTL 50
           SG++      + Y C  S +  L+ RVI+T S  +T+
Sbjct: 215 SGFHRLSASYIPYLCCFSSATDLICRVIFTTSPNRTV 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,461
Number of Sequences: 59808
Number of extensions: 375045
Number of successful extensions: 916
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)