Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c05
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein. 98 2e-20
BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase ... 98 2e-20
AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase ... 98 2e-20
AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associate... 98 2e-20
AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain cont... 98 2e-20
Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA... 36 0.095
DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA polyme... 36 0.095
BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (D... 36 0.095
AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed R... 36 0.095
AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein. 36 0.095
AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subu... 36 0.095
AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subu... 36 0.095
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 35 0.22
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 35 0.22
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 35 0.22
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 35 0.22
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 35 0.22
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 35 0.22
BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongatio... 35 0.29
AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongatio... 35 0.29
AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongatio... 35 0.29
AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongatio... 35 0.29
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 34 0.38
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 34 0.51
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 34 0.51
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 34 0.51
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 34 0.51
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 34 0.51
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 34 0.51
AK097798-1|BAC05174.1| 404|Homo sapiens protein ( Homo sapiens ... 34 0.51
>CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associated
zinc ribbon protein protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain
containing, 1 protein.
Length = 126
Score = 98.3 bits (234), Expect = 2e-20
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 16 IMSTESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTIS 195
+ +T S + FC+ CGS+LPL V C C + ++ + ++ F+ +
Sbjct: 6 LANTCSSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLG 65
Query: 196 VITNENILHTDGPE--GPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKET 369
++ +GPE GPVV+R+C +CG++ M+Y T Q+RSADEGQTVFYTC CK++E
Sbjct: 66 TAMPMSV--EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEK 123
Query: 370 ENS 378
E+S
Sbjct: 124 EDS 126
>Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA
polymerases III 12.5 kDa polypeptide protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed RNA
polymerase III C11 subunit protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subunit
protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subunit
CII protein.
Length = 108
Score = 36.3 bits (80), Expect = 0.095
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTC 345
C KC + R + LQ RSADE T FY C
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 35.1 bits (77), Expect = 0.22
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 35.1 bits (77), Expect = 0.22
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 273
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 35.1 bits (77), Expect = 0.22
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 35.1 bits (77), Expect = 0.22
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 35.1 bits (77), Expect = 0.22
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 35.1 bits (77), Expect = 0.22
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.29
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 256 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
+C+KC +Y +Q RSADE T F C +C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.29
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 256 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
+C+KC +Y +Q RSADE T F C +C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.29
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 256 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
+C+KC +Y +Q RSADE T F C +C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongation
factor TFIIS.h protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.29
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 256 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
+C+KC +Y +Q RSADE T F C +C
Sbjct: 281 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 313
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 34.3 bits (75), Expect = 0.38
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVCNEC 294
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.51
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.51
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.51
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 33.9 bits (74), Expect = 0.51
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RS+DE T F C +C
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 265
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 33.9 bits (74), Expect = 0.51
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RS+DE T F C +C
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 265
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.51
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 259 CAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
C KC +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>AK097798-1|BAC05174.1| 404|Homo sapiens protein ( Homo sapiens
cDNA FLJ40479 fis, clone TESTI2043282, moderately
similar to ZINC FINGER PROTEIN 43. ).
Length = 404
Score = 33.9 bits (74), Expect = 0.51
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 181 FNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
FN S++T I+HT E P KC +CG S +TL A + Y C +C
Sbjct: 50 FNRSSILTKHKIIHTG--EKPY---KCEECGKGFSSVSTLNTHKAIHAEEKPYKCEEC 102
Score = 30.7 bits (66), Expect = 4.7
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 181 FNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
FN S++T I+HT E P KC CG +TL A + Y C +C
Sbjct: 162 FNRSSILTKHKIIHTG--EKPY---KCEGCGKAFSKVSTLNTHKAIHAEEKPYKCEEC 214
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,458,917
Number of Sequences: 237096
Number of extensions: 1739108
Number of successful extensions: 3287
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 3129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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