Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c05
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-6|CAB02739.1|  119|Caenorhabditis elegans Hypothetical pr...    81   5e-16
Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AC024214-2|AAF36076.1|  108|Caenorhabditis elegans Hypothetical ...    38   0.008
U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone...    36   0.033
U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone...    36   0.033
AC024880-8|AAK85514.1|  167|Caenorhabditis elegans Hypothetical ...    35   0.058
AF026215-9|AAB71318.2|  319|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68303-8|CAA92640.2|  273|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z92825-5|CAE17713.2|  191|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z81035-6|CAB02739.1|  119|Caenorhabditis elegans Hypothetical
           protein C15H11.8 protein.
          Length = 119

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
 Frame = +1

Query: 37  LSTSTAFCARCGSILPL-LQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFNTISVITNEN 213
           LS    FC  CG+IL L  Q    V C  C   +      +            +V   + 
Sbjct: 6   LSYDDDFCGYCGAILELPAQAPATVSCKVCSTRWAVKERVDQVVSRVEKIYERTVADTDG 65

Query: 214 ILHTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 378
           I + +  +  VV+  C KCG+ + SY+T+Q RSADEGQTVFYTC+KCK K+ E S
Sbjct: 66  IENDESADA-VVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKCKKKDIEYS 119


>Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical
           protein T24H10.1 protein.
          Length = 308

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 256 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 354
           KC KCG    +Y  LQ RS+DE  T F  C++C
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLEC 301


>AC024214-2|AAF36076.1|  108|Caenorhabditis elegans Hypothetical
           protein Y77E11A.6 protein.
          Length = 108

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 244 VVERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 345
           V +  C  C + R  +  LQ RSADE  T+FY C
Sbjct: 64  VTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRC 97


>U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform b protein.
          Length = 434

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +1

Query: 22  STESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFN 186
           S     STS  FC  CG    + + +G V C  CK  +    + NL  QYT  FN
Sbjct: 8   SLSESTSTSADFCVVCGD-KAIGKHYGAVACNGCKGFFRRSVWQNL--QYTCRFN 59


>U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform a protein.
          Length = 435

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +1

Query: 22  STESPLSTSTAFCARCGSILPLLQEFGFVKCYTCKAHYEADNYSNLKFQYTIHFN 186
           S     STS  FC  CG    + + +G V C  CK  +    + NL  QYT  FN
Sbjct: 8   SLSESTSTSADFCVVCGD-KAIGKHYGAVACNGCKGFFRRSVWQNL--QYTCRFN 59


>AC024880-8|AAK85514.1|  167|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.5 protein.
          Length = 167

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
 Frame = +1

Query: 55  FCARCGSIL-PLLQEFGFVKCYTCK--AHYEADNYSNLKFQYTIH-FNTISVITNENILH 222
           FC  C ++L P   +   V  Y+C+   H E      +     +H  + ++ I  + I+H
Sbjct: 58  FCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGD-IIH 116

Query: 223 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK--CKYKETE 372
            D       E +C  CG  +  +   Q + A+E   ++Y C    C+++ TE
Sbjct: 117 -DPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 167


>AF026215-9|AAB71318.2|  319|Caenorhabditis elegans Hypothetical
           protein F09G2.2 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 20  CPLKARYQLVQRFALAVGPYYPCYK 94
           CP ++  + + +F LA+ PY  CY+
Sbjct: 287 CPFESARRAIDKFRLALSPYLSCYR 311


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 238 PQDHQYVVYSHL*SQI*Y*NVLCIEI-SGYYNYQPHNVLYKCSISRSQTLV 89
           PQ+HQ +V+S     I   +   +EI  GY  Y  H +L  CS +    +V
Sbjct: 564 PQNHQDIVFSMHSKDIEKCDQNSLEIYDGYATYDKHRILETCSSTLESQVV 614


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 238 PQDHQYVVYSHL*SQI*Y*NVLCIEI-SGYYNYQPHNVLYKCSISRSQTLV 89
           PQ+HQ +V+S     I   +   +EI  GY  Y  H +L  CS +    +V
Sbjct: 564 PQNHQDIVFSMHSKDIEKCDQNSLEIYDGYATYDKHRILETCSSTLESQVV 614


>Z68303-8|CAA92640.2|  273|Caenorhabditis elegans Hypothetical
           protein ZK809.7 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 7   KKLIMSTESPLSTSTAFCARCG--SILPLL-QEFGFVKCYTCKA 129
           +KL     S + +S   C  C   S++P++ Q+ G V CYTC A
Sbjct: 199 QKLDRKFTSSIGSSDIECVVCDKPSVIPMVGQKCGHVACYTCIA 242


>Z92825-5|CAE17713.2|  191|Caenorhabditis elegans Hypothetical
           protein C13C4.7 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 202 TNENILHTDGPEGPVVERKCAK--CGYDRMSYATLQLRSADEGQT 330
           TNE ++H DG    VV   C K   G D  SY  +   S  + +T
Sbjct: 22  TNETVVHHDGRLWDVVIETCDKDGAGTDAASYLKVFYESGHDSET 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,458
Number of Sequences: 27780
Number of extensions: 305462
Number of successful extensions: 777
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)