Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c03
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514          172   1e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294          171   2e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923          169   9e-43
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    53   2e-07
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    29   2.9  
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348...    29   2.9  
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...    29   2.9  
03_03_0162 - 14964106-14964644,14964810-14965020                       29   2.9  
01_05_0426 + 22042215-22042595,22044846-22045688                       27   6.8  
02_01_0686 + 5112712-5112942                                           27   8.9  

>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score =  172 bits (419), Expect = 1e-43
 Identities = 80/121 (66%), Positives = 99/121 (81%)
 Frame = +3

Query: 111 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 290
           A   + G  +   +A    ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9   AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68

Query: 291 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 470
           TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIA
Sbjct: 69  TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128

Query: 471 D 473
           D
Sbjct: 129 D 129


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score =  171 bits (417), Expect = 2e-43
 Identities = 84/126 (66%), Positives = 102/126 (80%), Gaps = 4/126 (3%)
 Frame = +3

Query: 108 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 275
           MAAA V     G  +   +A    ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1   MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60

Query: 276 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 455
           PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEV
Sbjct: 61  PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120

Query: 456 EVTIAD 473
           EVTIAD
Sbjct: 121 EVTIAD 126


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score =  169 bits (412), Expect = 9e-43
 Identities = 81/121 (66%), Positives = 100/121 (82%)
 Frame = +3

Query: 111 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 290
           A  + SGK   +   EV   HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9   APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66

Query: 291 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 470
           TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+
Sbjct: 67  TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126

Query: 471 D 473
           D
Sbjct: 127 D 127


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = +3

Query: 159 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 338
           ++P  +IRI L S  V  +E  C  +I  AK    +  GPV +PTK        +P    
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388

Query: 339 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 467
              +  F++R H+R+ID+  P ++ +  +  + +  GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431


>11_01_0676 -
           5511755-5511831,5512857-5513052,5513462-5513577,
           5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 110 GSRCSVRQRHRETPGRGLPYSP 175
           G  CS R+RHR   G  LP++P
Sbjct: 73  GVTCSRRRRHRRVTGLSLPHTP 94


>06_02_0345 +
           14833838-14833997,14834095-14834552,14834633-14834870,
           14834974-14835431,14836554-14836955
          Length = 571

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 176 HQDHSYFSQCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 304
           H   S   +CAL R+G     +W  ET   C G  P+P     +QDPA
Sbjct: 11  HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58


>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 203 CALTREGLC*PNQWSQETEAACKGPSP 283
           C L  EGL   ++W++   A  +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181


>03_03_0162 - 14964106-14964644,14964810-14965020
          Length = 249

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 132 CLTLQRLPCCLLNSGRDKQLFNQKLFSAEPEKPHVSVTFERA 7
           C  L+R+  C      +K  F+Q L     E+PH +++F RA
Sbjct: 31  CNRLKRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVRA 72


>01_05_0426 + 22042215-22042595,22044846-22045688
          Length = 407

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +2

Query: 182 DHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYH 310
           DH      A TR G+          E     P PH    PAYH
Sbjct: 13  DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55


>02_01_0686 + 5112712-5112942
          Length = 76

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 79  FISAGIQQA-TWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRR 222
           FI A + +   W+    + K +RN R+R  LF     L  LA  A  RR
Sbjct: 6   FIGAALIEVWRWEERMVEKKRTRNTRERGGLFPRKLQLRALAAIARFRR 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,939
Number of Sequences: 37544
Number of extensions: 309560
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)