Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c03
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   176   7e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    28   3.4  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.6  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   8.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  176 bits (429), Expect = 7e-45
 Identities = 78/101 (77%), Positives = 95/101 (94%)
 Frame = +3

Query: 171 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 350
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 351 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 473
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 213 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 335
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 511 FFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTISE 401
           FF K F G S+ +SA  +S    GSM  E +C  I+E
Sbjct: 4   FFNKLFTGASSSSSAAASSGMDLGSM--ESLCAAINE 38


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 514  FFFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFT 410
            + F  YF+    Y +A + +T T GS+L+ V C T
Sbjct: 956  YSFLLYFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 144  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 254
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 211 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 116
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 MAAAVVSGKDIEKPQAEVSPIH 173
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 MAAAVVSGKDIEKPQAEVSPIH 173
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,875,530
Number of Sequences: 27780
Number of extensions: 253317
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)