Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c03
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   176   6e-45
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   176   6e-45
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   174   3e-44
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   174   3e-44
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    57   6e-09
At1g20530.1 68414.m02558 hypothetical protein                          30   1.1  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At3g18310.1 68416.m02330 expressed protein                             27   7.5  
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2...    27   9.9  
At5g27220.1 68418.m03247 protein transport protein-related low s...    27   9.9  

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  176 bits (429), Expect = 6e-45
 Identities = 78/109 (71%), Positives = 97/109 (88%)
 Frame = +3

Query: 150 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 329
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 330 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 476
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  176 bits (429), Expect = 6e-45
 Identities = 78/109 (71%), Positives = 97/109 (88%)
 Frame = +3

Query: 150 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 329
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 330 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 476
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  174 bits (424), Expect = 3e-44
 Identities = 77/103 (74%), Positives = 94/103 (91%)
 Frame = +3

Query: 168 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 347
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 348 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 476
           WDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 82  WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  174 bits (424), Expect = 3e-44
 Identities = 77/103 (74%), Positives = 94/103 (91%)
 Frame = +3

Query: 168 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 347
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 348 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 476
           WDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 82  WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
 Frame = +3

Query: 111 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 290
           A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    +  GPV +P
Sbjct: 73  ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132

Query: 291 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVEVTI 467
           TK       K+P       +  F++R H+R+ID L+  ++ +  +  +++  GV+VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 390 GRSLSCGFASENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSW 247
           G   +C   S + P SLNL+H  FY   Y    +     P   ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 82  ISAGIQQATWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRRS 225
           +SAG ++ T  P+   AKT+  P   SP    S  LL L++ A S  S
Sbjct: 406 LSAGKKKTTSSPVSSSAKTTSTPVSSSP--DTSSFLLSLSLAADSSSS 451


>At3g18310.1 68416.m02330 expressed protein
          Length = 873

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 242 WSQETEAACKGPSPHANQDPA 304
           W+ +++  C GPSP   +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420


>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
           HD-ZIP protein 2 identical to homeobox-leucine zipper
           protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
           SP:P46601; contains Pfam profiles PF04618: HD-ZIP
           protein N terminus, PF02183: Homeobox associated leucine
           zipper,  PF00046: Homeobox domain
          Length = 283

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 402 RESVGRSLSCGFASENDPRSLNLH 331
           +E +G SLS GF+  ++P  +NL+
Sbjct: 5   KEDLGLSLSLGFSQNHNPLQMNLN 28


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 203 IARSKSDPDAVNRGDLCL 150
           +A +K DPD+V RG +CL
Sbjct: 698 MAVTKLDPDSVRRGSICL 715


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,442
Number of Sequences: 28952
Number of extensions: 239460
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)