Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c01
(254 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 22 1.2
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 20 3.6
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 20 3.6
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 20 4.8
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 19 8.4
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 19 8.4
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 19 8.4
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 21.8 bits (44), Expect = 1.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = +3
Query: 18 FPDIA---FFHLLTHAIFKAL 71
FPD A FF LLT I+K L
Sbjct: 200 FPDSARKPFFKLLTSKIYKVL 220
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 20.2 bits (40), Expect = 3.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 412 DKEGIPPDQQRSIFAGKQLE 431
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 32 DKEGIPPDQQRLIFAGKQLE 51
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 108 DKEGIPPDQQRLIFAGKQLE 127
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 184 DKEGIPPDQQRLIFAGKQLE 203
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 260 DKEGIPPDQQRLIFAGKQLE 279
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 336 DKEGIPPDQQRLIFAGKQLE 355
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 488 DKEGIPPDQQRLIFAGKQLE 507
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 564 DKEGIPPDQQRLIFAGKQLE 583
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 640 DKEGIPPDQQRLIFAGKQLE 659
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 20.2 bits (40), Expect = 3.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 80 DKEGIPPDQQRSIFAGKQLE 99
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 4 DKEGIPPDQQRLIFAGKQLE 23
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 19.8 bits (39), Expect = 4.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 223 NPDKKGIPHKDKFEIFKHKEVKGIYKD 143
NPD +GI + E+ + K + G+ ++
Sbjct: 323 NPDVRGIKSVQEVEMLREK-IYGVLEE 348
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 19.0 bits (37), Expect = 8.4
Identities = 5/19 (26%), Positives = 14/19 (73%)
Frame = -2
Query: 199 HKDKFEIFKHKEVKGIYKD 143
++ + ++ KH+++ GI+ D
Sbjct: 21 YRGRKKLSKHQQIYGIWAD 39
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 32 DKEGIPPDQQRLIFAGKQLE 51
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 19.0 bits (37), Expect = 8.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 217 DKKGIPHKDKFEIFKHKEVK 158
DK+GIP + IF K+++
Sbjct: 32 DKEGIPPDQQRLIFAGKQLE 51
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,966
Number of Sequences: 336
Number of extensions: 454
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used: 3951341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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