Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c01
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024758-1|AAL32236.1|  109|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    25   9.8  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    25   9.8  

>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 29  CFFSFINSCYI*SFIIY 79
           C FSFI  CYI S I Y
Sbjct: 163 CHFSFIFVCYIVSVITY 179


>AC024758-1|AAL32236.1|  109|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.3 protein.
          Length = 109

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 220 PDKKGIPHKDKFEIFKHKEVKGIY 149
           PDK+  P  D+FE+F H+ ++ ++
Sbjct: 25  PDKRPFPI-DQFELFVHEAIREVF 47


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 220 PDKKGIPHKDKFEIFKH 170
           PD+ G+PH D  ++F +
Sbjct: 188 PDEHGVPHLDLMQLFSY 204


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 220 PDKKGIPHKDKFEIFKH 170
           PD+ G+PH D  ++F +
Sbjct: 188 PDEHGVPHLDLMQLFSY 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,684
Number of Sequences: 27780
Number of extensions: 38801
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)