Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c01
         (254 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03440.1 68417.m00471 ankyrin repeat family protein contains ...    29   0.56 
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f...    25   5.2  

>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 751

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 9   RLGFPDIAF--FHLLTHAIFKALLFIC 83
           +LG P++A   FHL   A+F ALLF+C
Sbjct: 622 QLGDPELAHRAFHLALPALFVALLFMC 648


>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
           family protein contains tyrosine specific protein
           phosphatases active site, PROSITE:PS00383
          Length = 215

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   ILRLGFPDIAFFHLLTHAIFKALLFIC 83
           I R GFPD A F  L     ++++++C
Sbjct: 66  IFRSGFPDSANFSFLQTLGLRSIIYLC 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,916
Number of Sequences: 28952
Number of extensions: 34916
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 12,070,560
effective HSP length: 63
effective length of database: 10,246,584
effective search space used: 215178264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)