Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b24
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0394 - 17261008-17262476,17262554-17262743 29 2.0
08_01_0083 - 604175-605776 28 2.7
08_01_0082 - 588269-588434,590800-591653 28 2.7
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 28 2.7
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 3.6
12_01_0827 - 7662180-7662192,7662451-7662764 27 4.7
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 4.7
01_07_0315 - 42692539-42693260,42693357-42693609 27 6.2
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 27 6.2
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226... 27 8.2
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 27 8.2
01_07_0317 + 42699035-42699305,42699411-42700132 27 8.2
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 311 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 225
KP RR +PS S VW V LL+V C
Sbjct: 4 KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32
>08_01_0083 - 604175-605776
Length = 533
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 95 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 95 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 214 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 306
+++EH T S+ HT S+ ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 114 LKNGAGVSNHMWHRLKNDDGDDKPCLN 34
L G G +NH H +DD DD P L+
Sbjct: 56 LMRGGGAANHHHHDDDDDDDDDVPWLH 82
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 212 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 304
PK Q T++ +AR +T + ++RSD ACPR
Sbjct: 25 PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 115 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 216
P + A R T A+VD A EDPG + A E
Sbjct: 87 PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 195 GSWIFCMCEVYPGGVC-NPSF 136
G FCMC+ YPG C +P F
Sbjct: 79 GCKTFCMCDFYPGVSCGDPRF 99
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 47 LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 133
LSSPS +R FDT PF R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652
>08_02_0393 +
16621137-16621139,16621392-16621583,16622559-16622612,
16623041-16623160,16623280-16623501,16623594-16623650,
16623993-16624046,16624395-16624426,16624888-16625023,
16625108-16625278,16625430-16625661,16626018-16626022
Length = 425
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 231 SVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSF 136
S CNF LS+ G +I+ + E++ VC+ SF
Sbjct: 82 SKICNFHTLSLLGYFIYNVLEIFIIIVCSISF 113
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 26 ITQFKHGLSSPSSFFNRCHI-WFDTPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEP 196
+T L+SP + + W + PA +HT Q PP H QK Q P
Sbjct: 472 LTTLGLNLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTP 529
>01_07_0317 + 42699035-42699305,42699411-42700132
Length = 330
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 183 FCMCEVYPGGVC-NPSF 136
FCMC+ YPG C +P F
Sbjct: 89 FCMCDFYPGVSCGDPRF 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,300,914
Number of Sequences: 37544
Number of extensions: 204210
Number of successful extensions: 560
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -