Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b20
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   190   6e-49
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)           186   6e-48
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)           186   6e-48
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot...    29   2.4  
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ...    28   4.1  
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain...    27   5.4  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    27   7.2  
At3g07210.1 68416.m00860 expressed protein predicted using genef...    27   7.2  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    27   7.2  
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.5  
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.5  
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.5  

>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  190 bits (462), Expect = 6e-49
 Identities = 89/134 (66%), Positives = 108/134 (80%)
 Frame = +1

Query: 70  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 249
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 250 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 429
           S+KKTRH LPNGF+K +VHN  ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + 
Sbjct: 60  SDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVV 119

Query: 430 VTNAAARLRSQENE 471
           VTN  ARLRSQE+E
Sbjct: 120 VTNRLARLRSQEDE 133


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  186 bits (454), Expect = 6e-48
 Identities = 86/134 (64%), Positives = 107/134 (79%)
 Frame = +1

Query: 70  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 249
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 250 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 429
           S+KKTRH LPNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + 
Sbjct: 60  SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119

Query: 430 VTNAAARLRSQENE 471
           V+N   RLRSQE+E
Sbjct: 120 VSNKLGRLRSQEDE 133


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  186 bits (454), Expect = 6e-48
 Identities = 86/134 (64%), Positives = 107/134 (79%)
 Frame = +1

Query: 70  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 249
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 250 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 429
           S+KKTRH LPNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + 
Sbjct: 60  SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119

Query: 430 VTNAAARLRSQENE 471
           V+N   RLRSQE+E
Sbjct: 120 VSNKLGRLRSQEDE 133


>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich proteins
           SP|P40603 SP|P40602 from {Arabidopsis thaliana};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 385

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 127 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 282
           +R Q D Y K++R WR   G +   +R  +  YL   I  GSN  +   L N
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSNDYSSIFLTN 194


>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain);
          Length = 211

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 283 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQ 462
           G +K +V  VK++E+L + NRK   +     S K+   I  + ++    V    A+L   
Sbjct: 90  GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149

Query: 463 E 465
           E
Sbjct: 150 E 150


>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
           protein similar to PF02225: PA domain; similar to
           N-acetylated-alpha-linked acidic dipeptidase II
           (NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
           Glutamate carboxypeptidase II (Membrane glutamate
           carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
           acidic dipeptidase I) (NAALADase I)
           (Pteroylpoly-gamma-glutamate
           carboxypeptidase)(Folylpoly-gamma-glutamate
           carboxypeptidase) (FGCP) (Folate hydrolase 1)
           (Prostate-specific membrane antigen homolog) (SP|O77564)
           {Sus scrofa}
          Length = 280

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 73  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 183
           A+ P     ++ + +K +++H + R DKL++   KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
            PF04931: DNA polymerase V
          Length = 1306

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 292  KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 387
            K LV N+ E ++   Q RK+C  I   VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273


>At3g07210.1 68416.m00860 expressed protein predicted using
           genefinder
          Length = 547

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 382 SKRHHERSLRSTSCFASSRF 323
           S+ HHER  RS SC +SSR+
Sbjct: 451 SEFHHERVGRSQSCVSSSRW 470


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 115 TKRFIRHQSDRY-DKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFR 291
           +++ I +  ++Y DK+K ++ K   + N +R R+   ++   + Y      RH+L N  +
Sbjct: 216 SRKLIDYVENKYVDKVKEDFGKCVSVANNLRWRYWKCHICSQVYYCFTDCQRHILDNHVQ 275

Query: 292 K 294
           K
Sbjct: 276 K 276


>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 462

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 403 PRSASASSKRHHERSLRSTSCFAS 332
           P S+S++S+ HHE  L    CF++
Sbjct: 74  PYSSSSTSRHHHESLLLEILCFSN 97


>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 446

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 403 PRSASASSKRHHERSLRSTSCFAS 332
           P S+S++S+ HHE  L    CF++
Sbjct: 74  PYSSSSTSRHHHESLLLEILCFSN 97


>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 403 PRSASASSKRHHERSLRSTSCFAS 332
           P S+S++S+ HHE  L    CF++
Sbjct: 74  PYSSSSTSRHHHESLLLEILCFSN 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,149
Number of Sequences: 28952
Number of extensions: 208394
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)