Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b17
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.50 
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   3.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.1  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   8.1  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 647 TLNLNNIFVKLN--KNNTSFIYFSMVQHHMNHEQ 552
           TL L +I VKL+  KNN  FI+ S + + +N +Q
Sbjct: 532 TLELQDILVKLSTPKNNDVFIFSSKITNKLNDDQ 565


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -3

Query: 398 SDQRIEYSGFRYAAIQSLLSFGHQLLEGYRPPGKTQW*L----FPPVLADQTDIPKQVAR 231
           S QR +YS   Y+AI + +S  +Q  +   PP      L     P   +D    P++V+ 
Sbjct: 333 SSQR-KYSASSYSAIPNAMSVSNQAFDVESPPSSYATPLTGIRMPQPESDLYSYPREVSP 391

Query: 230 QSFLLRLRGH 201
            S   R+ GH
Sbjct: 392 SSGGYRMFGH 401


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 256 VWSASTGGNNYHCVLPGGRYPSSNWCPKLS 345
           VW+  TG +       G  Y  S+WCP  S
Sbjct: 287 VWNVETGESLGSFPRSGNWYTKSSWCPSNS 316


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 253 SVWSASTGGNNYHCVLPGG--RYP 318
           S W  +   N +HC+L  G  RYP
Sbjct: 665 SYWPVTVADNQFHCILLKGASRYP 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,406
Number of Sequences: 5004
Number of extensions: 56819
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)