Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b17
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0245 - 6198271-6198437,6198496-6198559,6199011-6199259,619...    29   4.8  
01_05_0310 + 20734767-20734936,20735160-20735288,20735748-207358...    28   8.4  

>09_02_0245 -
           6198271-6198437,6198496-6198559,6199011-6199259,
           6199796-6199864,6199956-6200006,6200967-6201014,
           6201175-6201255,6202793-6202831,6203045-6203128,
           6204524-6204728,6205041-6205143,6205224-6205353,
           6206059-6206250
          Length = 493

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 470 ALTPEF*WHNKLTFYKRIDLISCFSDQRIEYSGFRYAAIQSLLSFGHQLLEGYRPP 303
           A+TP F     +       + +CFS Q ++Y   RY   Q++ S+     E ++ P
Sbjct: 190 AITPTFIGPVPVLLQLDAAMENCFSVQALQYLSVRYGVFQAVYSYWKDKRERWQKP 245


>01_05_0310 +
           20734767-20734936,20735160-20735288,20735748-20735850,
           20736017-20736119,20737394-20737496,20737620-20737674,
           20737768-20737800,20737936-20737982,20738221-20738347
          Length = 289

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 262 SASTGGNNYHCVLPGGRYPSSNWC 333
           SAS  G    C + GGR  S+ WC
Sbjct: 15  SASAAGAGLRCCVSGGRAGSAAWC 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,024,662
Number of Sequences: 37544
Number of extensions: 324782
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)