Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b17
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.8  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    25   2.3  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   4.1  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    23   7.2  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    23   7.2  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 277  GNNYHCVLPGGRY-PSSN 327
            G NY+CV PG R+ P SN
Sbjct: 1110 GINYNCVAPGKRFQPMSN 1127


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 374 GFRYAAIQSLLSFGHQLLEGYRP--PGKTQW*LFPPVLADQTDIPKQVARQS 225
           G R+AAI+ LL + HQ    Y P   GK       P LA +T+  ++   Q+
Sbjct: 301 GHRFAAIEQLLKWAHQ----YAPMRGGKAHLEEILPTLALETEKLRRTVEQT 348


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 641 NLNNIFVKLNKNNTSFIYFSMVQHHMNHEQ 552
           NL ++    N N  + +  +++ HH +H Q
Sbjct: 95  NLRSVVANGNANREAGMKINLLNHHQHHHQ 124


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1977

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 374 GFRYAAIQSLLSFGHQLLEGY-RPPGKTQW*LFPPVLADQTDIPKQVARQ 228
           GFR    +  LSFGH+  +     PG  +     PV     D   Q+ RQ
Sbjct: 447 GFRVLVEREWLSFGHKFADRCGHGPGSDETNERCPVFLQWLDCVHQIHRQ 496


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1978

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 374 GFRYAAIQSLLSFGHQLLEGY-RPPGKTQW*LFPPVLADQTDIPKQVARQ 228
           GFR    +  LSFGH+  +     PG  +     PV     D   Q+ RQ
Sbjct: 447 GFRVLVEREWLSFGHKFADRCGHGPGSDETNERCPVFLQWLDCVHQIHRQ 496


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,410
Number of Sequences: 2352
Number of extensions: 14172
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)