Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b17
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 443 NKLTFYKRIDLISCFSDQRIEYSGFRYAAIQSLLSFGHQLLE 318
           N+L+F ++ DLI   ++ +IEYSG +Y  +    +F   L+E
Sbjct: 844 NELSFLEKSDLIIVMNEGKIEYSG-KYDDLMQQGAFEQLLIE 884


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 443 NKLTFYKRIDLISCFSDQRIEYSGFRYAAIQSLLSFGHQLLE 318
           N+L+F ++ DLI   ++ +IEYSG +Y  +    +F   L+E
Sbjct: 844 NELSFLEKSDLIIVMNEGKIEYSG-KYDDLMQQGAFEQLLIE 884


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 266 PVLVETTTT--AFYQAADILLVIGVQN*ARTEWLHNEIPNIL 385
           P+   TTT   A+    D++  +  +N  + EW+H+E+  ++
Sbjct: 371 PLFYNTTTMDGAYLPEIDMIFNLNAKNFKQYEWIHSEVSKVM 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,464
Number of Sequences: 27780
Number of extensions: 313888
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)