Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b16
(1063 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 165 4e-41
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 160 1e-39
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 147 1e-35
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 129 4e-30
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 43 5e-04
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 38 0.013
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.13
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 33 0.38
11_06_0683 + 26259129-26259968 30 3.6
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 30 3.6
01_06_0490 + 29759801-29759880,29759881-29759980,29760468-297605... 29 4.7
11_06_0008 - 19181933-19182009,19185148-19185691 29 8.3
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 29 8.3
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 165 bits (402), Expect = 4e-41
Identities = 77/151 (50%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Frame = +3
Query: 12 MKAICIISGD--VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAG 185
+KA+ +++ V G I+F QE + P ++G + L GLHGFHVH GDT+NGC S G
Sbjct: 2 VKAVAVLASSEGVKGTIFFSQEG-DGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60
Query: 186 EHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVH 365
HFNPT ++HGAP E RH GDLGNI + G + + +N+ D+ + L G H+IIGR++VVH
Sbjct: 61 PHFNPTGKEHGAPQDENRHAGDLGNI-TAGADGVANVNVSDSQIPLTGAHSIIGRAVVVH 119
Query: 366 TDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 458
D DDLG H LSKTTGN+ GR+ CGII +
Sbjct: 120 ADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 160 bits (389), Expect = 1e-39
Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Frame = +3
Query: 12 MKAICIISGD--VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAG 185
+KA+ ++ V G I+F QE + P ++G + L GLHGFH+H GDT+NGC S G
Sbjct: 120 VKAVVVLGSSEIVKGTIHFVQEG-DGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTG 178
Query: 186 EHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVH 365
H+NP ++HGAP+ E RH GDLGN+ + G + + I+++D+ + L GP++IIGR++VVH
Sbjct: 179 PHYNPAGKEHGAPEDETRHAGDLGNV-TAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 237
Query: 366 TDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 458
D DDLG H LSKTTGN+ GR+ CGII +
Sbjct: 238 ADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 147 bits (356), Expect = 1e-35
Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Frame = +3
Query: 15 KAICIISG--DVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGE 188
KA+ ++ G V G + Q+ P ++ + L GLHGFH+HE+GDT+NGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQG-PTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 189 HFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHT 368
HFNP N HGAP+ E+RH GDLGNI + + E ++D + L GP++++GR+ VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 369 DKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 458
+DDLG H LS +TGN+ GRL CG++ +
Sbjct: 171 LEDDLGKGGHELSLSTGNAGGRLACGVVGL 200
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 129 bits (311), Expect = 4e-30
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Frame = +3
Query: 12 MKAICIISGD-----VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCT 176
+K + +I G V G ++F Q+ + ++ G + L GLHGFH+H +GDT+NGC
Sbjct: 8 LKGVALIGGAGGNSAVAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCN 67
Query: 177 SAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSL 356
S G HFNP N+ HGAP + RHVGDLGNI + + + +I + D +SL GPH+I+GR++
Sbjct: 68 STGPHFNPHNKSHGAPSDDERHVGDLGNIVA-NKDGVADIFIKDLQISLSGPHSILGRAV 126
Query: 357 VVHTDKDDLG 386
VVH D DDLG
Sbjct: 127 VVHADSDDLG 136
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 42.7 bits (96), Expect = 5e-04
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = +3
Query: 114 LPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTE 293
L G HG+ ++E+GD + G S G+ +NP++ P +GDLG +++ G +
Sbjct: 199 LSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA-GEKGEAQ 251
Query: 294 INMMDNVMSLYGPHNIIGRSLVVHT--DKDDLGLTEHPLSKTTG 419
+ + + ++IGRS+ ++ D+ D G+ ++++ G
Sbjct: 252 FSASKEKLKVV---DLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 37.9 bits (84), Expect = 0.013
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +3
Query: 171 CTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGR 350
C A E F P + PDA + GD NI S ++ N++D ++ + G N
Sbjct: 1095 CAFAHERFEPRDNPSSTPDARVSEDGDNINIGSPDSENIMLQNVVDTIVDIVGLENEAIH 1154
Query: 351 SLVVHTDKDDLGLTE 395
S+V+ + ++ +E
Sbjct: 1155 SIVIGAAESEIWPSE 1169
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.13
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 126 LHGFHVHEYGDTSNGCTSAG 185
LHGFHVH G T+NGC G
Sbjct: 50 LHGFHVHALGGTTNGCMRNG 69
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 33.1 bits (72), Expect = 0.38
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 63 QQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 209
Q +S P + +LNLP+G H F E +S C + P NE
Sbjct: 397 QSQSVQMPASENAQILNLPQGAHCFPSGELPSSSQDCLLNPLQYQPLNE 445
>11_06_0683 + 26259129-26259968
Length = 279
Score = 29.9 bits (64), Expect = 3.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 PRGLHGFHVHEYGDTSNGCTSAG-EHFNPTNEDHGAPDAEIRHV 245
P +G+H+H T C AG H++P+ + D +RH+
Sbjct: 224 PPPCYGYHLHYCHCTHGHCHCAGGRHYSPSYYSDDSADVRLRHM 267
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 29.9 bits (64), Expect = 3.6
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 30 ISGDVHGK-IYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHF-NPT 203
+ GDV K +YF S L G+ L +P G V E G + S E F +P
Sbjct: 294 VKGDVELKNVYFSYPSRPEHLVFDGFSLQVPSGTRMALVGESGSGKSTVISLVERFYDPQ 353
Query: 204 NEDHGAPDAEIRHVGDLGNIK 266
+ + +IR + +LG+I+
Sbjct: 354 SGEVLIDGVDIRRI-NLGSIR 373
>01_06_0490 +
29759801-29759880,29759881-29759980,29760468-29760574,
29761305-29761554,29761989-29762111,29762471-29762638,
29762741-29762878,29763206-29763235
Length = 331
Score = 29.5 bits (63), Expect = 4.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 99 GYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPD 227
G+ L+ RG G +VH+Y + S + GE+++ + +G D
Sbjct: 103 GWRLDFVRGFWGGYVHDYLEASEPYFAVGEYWDSLSYTYGEMD 145
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 448 IPHPKRPSELPVVLLNGCSVRPRSSLSVCTTKLL 347
+ HP+ P LPV+L G P SSL+ +T+LL
Sbjct: 120 VSHPQAPPLLPVLLELGGLRAPVSSLASLSTRLL 153
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 28.7 bits (61), Expect = 8.3
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 255 GNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGR 434
G IK + L + ++ + SL GPH +IG V + D+GL P S+ N R
Sbjct: 671 GGIKKHFISKLPPVLVIHLMRSLLGPHKVIGH--VRFKEILDMGLFMDPSSEDKDNLSYR 728
Query: 435 L 437
L
Sbjct: 729 L 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,670,110
Number of Sequences: 37544
Number of extensions: 475521
Number of successful extensions: 971
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3152842920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -