Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b16
         (1063 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...   157   1e-38
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...   154   1e-37
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...   145   5e-35
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    46   4e-05
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1...    31   0.98 
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    30   2.3  
At2g47300.1 68415.m05905 hypothetical protein                          29   3.9  

>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score =  157 bits (381), Expect = 1e-38
 Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = +3

Query: 3   RNNMKAICIISGD--VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCT 176
           R N++A+ +I+GD  V G + F Q+ +     ++G +  L  G HGFH+H +GDT+NGC 
Sbjct: 5   RGNLRAVALIAGDNNVRGCLQFVQDISGTT-HVTGKISGLSPGFHGFHIHSFGDTTNGCI 63

Query: 177 SAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSL 356
           S G HFNP N  HG P+ E RH GDLGNI + G N + EI + D  + L G ++I+GR++
Sbjct: 64  STGPHFNPLNRVHGPPNEEERHAGDLGNILA-GSNGVAEILIKDKHIPLSGQYSILGRAV 122

Query: 357 VVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 458
           VVH D DDLG   H LSK+TGN+  R+GCGII +
Sbjct: 123 VVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score =  154 bits (373), Expect = 1e-37
 Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
 Frame = +3

Query: 15  KAICIISG--DVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGE 188
           KA+ ++ G  DV G +   Q+ +  P  ++  +  L  G HGFH+HE+GDT+NGC S G 
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSG-PTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGP 124

Query: 189 HFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHT 368
           HFNP N  HGAP+ E RH GDLGNI +   + + E  ++DN + L GP++++GR+ VVH 
Sbjct: 125 HFNPNNMTHGAPEDECRHAGDLGNI-NANADGVAETTIVDNQIPLTGPNSVVGRAFVVHE 183

Query: 369 DKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 458
            KDDLG   H LS TTGN+ GRL CG+I +
Sbjct: 184 LKDDLGKGGHELSLTTGNAGGRLACGVIGL 213


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score =  145 bits (351), Expect = 5e-35
 Identities = 72/147 (48%), Positives = 92/147 (62%)
 Frame = +3

Query: 18  AICIISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 197
           A+   S  V G I+F QE  +    +SG +  L  GLHGFHVH  GDT+NGC S G HFN
Sbjct: 6   AVLNSSEGVTGTIFFTQEG-DGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFN 64

Query: 198 PTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKD 377
           P  + HGAP+   RH GDLGNI +VG +      + D  + L GP++I+GR++VVH D D
Sbjct: 65  PDGKTHGAPEDANRHAGDLGNI-TVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPD 123

Query: 378 DLGLTEHPLSKTTGNSDGRLGCGIIAI 458
           DLG   H LS  TGN+ GR+ CGII +
Sbjct: 124 DLGKGGHELSLATGNAGGRVACGIIGL 150


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
 Frame = +3

Query: 39  DVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHG 218
           D+ G + F Q S     +I      L  G H + ++EYGD +NG  S G  +NP  +  G
Sbjct: 106 DIFGVVRFAQVSMELA-RIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG 164

Query: 219 APDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVH-TD--KDDLGL 389
                   +GDLG +++            + +       ++IGR++VV+ TD  K   GL
Sbjct: 165 T-----EPLGDLGTLEADKNGEAFYSGKKEKLKVA----DLIGRAVVVYKTDDNKSGPGL 215

Query: 390 TEHPLSKTTG 419
           T   ++++ G
Sbjct: 216 TAAVIARSAG 225


>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
           SP|P14714 Phytochrome C {Arabidopsis thaliana}
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 3   RNNMKAICIISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSN 167
           RN ++ IC  S  V  K+  Q +S ++P+ +SG  L  P G H  ++   G  ++
Sbjct: 279 RNKVRMICDCSA-VPVKVV-QDKSLSQPISLSGSTLRAPHGCHAQYMSNMGSVAS 331


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 249 DLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSD 428
           + G  K  G+     +    N ++L G   I GR++ V    D   + E   ++TTG+ D
Sbjct: 320 ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLD 379

Query: 429 GRLGCGI 449
              G G+
Sbjct: 380 DDDGGGL 386


>At2g47300.1 68415.m05905 hypothetical protein
          Length = 344

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 29/116 (25%), Positives = 55/116 (47%)
 Frame = +3

Query: 228 AEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLS 407
           AE+++V DL   ++V   ++    ++D  + L  PH+   R++ V T K +   TE    
Sbjct: 56  AEVKNVADLYTEENVSSGAILAQFVIDPRLILTSPHD--DRTVSVETIKTE--PTES--V 109

Query: 408 KTTGNSDGRLGCGIIAICK*CHRFNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 575
           +TT N++      +         FN L++ NS       ++++C+ K   R D +C
Sbjct: 110 ETTTNTEAETFPEV---------FNCLWDANSELTPPEEENMLCWEKHQSRMDSLC 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,838
Number of Sequences: 28952
Number of extensions: 400578
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2627750416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)