Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b13
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 3.1
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 3.1
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 4.1
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 28 5.4
U42437-3|AAA83495.1| 297|Caenorhabditis elegans Hypothetical pr... 28 5.4
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF125964-5|AAP13765.1| 722|Caenorhabditis elegans Hypothetical ... 28 7.1
AF125964-2|AAD14754.1| 726|Caenorhabditis elegans Hypothetical ... 28 7.1
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 334 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 197
RL+I I GLS+ +STPS V++ P L S+V++ L +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
R03E1.1 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 222 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 323
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 222 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 323
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 IDGLSTEHNSTPSFSVNKMGSPGML 242
I L T H STPS ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 250 PENPFCLQKTRGCCCAPSTD 309
PEN FC + T G CC P D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184
>U42437-3|AAA83495.1| 297|Caenorhabditis elegans Hypothetical
protein F30B5.6 protein.
Length = 297
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 LCC*SSNMPICIIIFLKNYGVFEYCKSLTD 615
LC S N+ C++IF Y +F YC ++ D
Sbjct: 125 LCAISVNL--CLLIFFDQYMMFGYCNNVID 152
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 IDGLSTEHNSTPSFSVNKMGSPGML 242
I L T H STPS ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246
>AF125964-5|AAP13765.1| 722|Caenorhabditis elegans Hypothetical
protein W03G1.6b protein.
Length = 722
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/99 (21%), Positives = 44/99 (44%)
Frame = +3
Query: 162 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 341
++ + ++ L+ N ME ++ +++ P N +LCS P+I L
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366
Query: 342 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 458
D L + ++D ++ + A +KN SD+ S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405
>AF125964-2|AAD14754.1| 726|Caenorhabditis elegans Hypothetical
protein W03G1.6a protein.
Length = 726
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/99 (21%), Positives = 44/99 (44%)
Frame = +3
Query: 162 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 341
++ + ++ L+ N ME ++ +++ P N +LCS P+I L
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366
Query: 342 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 458
D L + ++D ++ + A +KN SD+ S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 348 EALVNFENDNC-NVRIAKTFGASKRKNTTRSDDYESN 455
EA+ N ++DN + + KTFG + +++ SD+ SN
Sbjct: 39 EAVKNLKDDNVLSKALVKTFGLNSSSSSSLSDESSSN 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,838
Number of Sequences: 27780
Number of extensions: 302435
Number of successful extensions: 845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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