Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b12
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 1e-30
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 1e-30
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 129 1e-30
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 129 1e-30
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 104 3e-23
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 78 4e-15
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 59 2e-09
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 50 1e-06
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.010
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 37 0.010
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.013
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 34 0.069
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 33 0.091
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 31 0.37
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 31 0.64
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_43701| Best HMM Match : ubiquitin (HMM E-Value=0.003) 29 1.5
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 1.5
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 29 2.0
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 29 2.6
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 29 2.6
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025) 28 3.4
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 4.5
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_42551| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 7.9
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 27 7.9
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 129 bits (312), Expect = 1e-30
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 376 IQKESTLHMVLRLRGG 423
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQI +K KT T + E ++TV +K+KI ++EG+P QRL++ ++L D++++ADYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 376 IQKESTLHMVL 408
I++ S LH+ L
Sbjct: 136 IKQGSILHLFL 146
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 104 bits (250), Expect = 3e-23
Identities = 46/63 (73%), Positives = 56/63 (88%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 376 IQK 384
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 77.8 bits (183), Expect = 4e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = +1
Query: 301 VPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 423
+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 42
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 58.8 bits (136), Expect = 2e-09
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +1
Query: 151 AHSRQPLSFVSNSVKMQIFIKTLTGKTITAETE-PAETVADLKQKIADKEGVPVDQQRLI 327
AH VSN I + TLTG+ I + P T+ ++K I K G P DQQRL+
Sbjct: 59 AHFEDDDQIVSNP---HIAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLV 115
Query: 328 FAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 423
F G+ L D T I +TLH+++RL GG
Sbjct: 116 FNGQVLSDEDTFEKVGIFAGATLHLIVRLLGG 147
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 187 SVKMQIFIKTLTGKTITAETEPAETVADLKQKI-ADK--EGVPVDQQRLIFAGKQLEDSK 357
SV M I KTL +T E ETV LKQKI ADK + P +LI+AGK L D
Sbjct: 64 SVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDN 123
Query: 358 TMADYNIQKES 390
+ +YNI ++S
Sbjct: 124 PLKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 36.7 bits (81), Expect = 0.010
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 262 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQK 384
V LK +I K G+P D QRL F K+L D T+A N+++
Sbjct: 29 VFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 232 ITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 375
+T +T +ET + +EG+P ++QRLIF GK L+D K + +++
Sbjct: 3 VTVKTLDSET----RTFTVSEEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 36.3 bits (80), Expect = 0.013
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 259 TVADLKQKIADKEGVPVDQQRLIF-AGKQLEDSKTMADYNIQKESTLHM 402
TV DLK + +K G+ V RL+ GK++ D + DYNI T+ +
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.9 bits (74), Expect = 0.069
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 298 GVPVDQQRLIFAGKQLEDSKTMADYN 375
G+P ++QRLIF GK L+D K + +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 33.5 bits (73), Expect = 0.091
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +1
Query: 187 SVKMQIF---IKTLTGKTIT-AETEPAETVADLKQKIADKEGVPVDQQRLIFA-GKQLED 351
S K+++F +K T + T + P TV DLK +I + GVP RL + G L D
Sbjct: 1048 SAKIRLFSLHLKFPTDEKFTISRVCPGMTVKDLKNRIELETGVPRHLLRLRYLDGYDLTD 1107
Query: 352 SKTMADYNIQKESTLHMVL 408
+ ++ YN+ +T+ ++L
Sbjct: 1108 DRRLSYYNMVPAATVQVLL 1126
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 259 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 414
TV LKQ I +EG + +Q + F G QL D+ T+ + S H+ LR+
Sbjct: 29 TVLRLKQLIEAQEGFGISEQEVHFQGNQLVDALTLGQQGVLDGS--HLDLRV 78
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 202 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQ 381
+ ++T G T+ E +V DLK + + G+PV+ RL LEDS+ + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 382 KEST 393
+++T
Sbjct: 245 QKAT 248
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 31.1 bits (67), Expect = 0.49
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 223 GKTITAETEPA-ETVADLKQKIADKEGVPVDQQ-RLIFAGKQLEDSKTMADYN 375
G T E E A E+V L IA G+PVD+Q LI G+ L+ + + +Y+
Sbjct: 10 GAMYTFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALDPNDRVCNYS 62
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 30.7 bits (66), Expect = 0.64
Identities = 24/108 (22%), Positives = 43/108 (39%)
Frame = +1
Query: 100 VWVSAACCTVPPSVEAGAHSRQPLSFVSNSVKMQIFIKTLTGKTITAETEPAETVADLKQ 279
VW +P + G S P + S V L ++ A + A + Q
Sbjct: 202 VWTEEVDPLLPGRRQEGPESLDPEEYYSQFVGGA----HLRSPSVDATLRGQDISASVYQ 257
Query: 280 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 423
+I D G V + + G + D + +++ + L +VLR++GG
Sbjct: 258 EIRDLGGTGVIALKPVMRGPDINDDGSHERESLRANAVLPLVLRMKGG 305
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 208 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK---TMADYNI 378
+ + G+T P ++A+LK KI+ V +QRL++ +L+++K ++++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 379 QKESTLHMVLRL 414
+T+ +++ L
Sbjct: 120 PPYATISLIVVL 131
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.3 bits (65), Expect = 0.85
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 226 KTITAETEPAETVADLKQKIAD-KEGVPVDQQRLIFAGKQLEDSKTMAD-YNIQKES 390
K + + EP E V + QK+ D E VPV + +L A K D+K D +I+KES
Sbjct: 799 KALEGKEEPEEKVEE--QKVVDMNEDVPVMEDKLEEAAKVANDNKIDYDIVDIKKES 853
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 196 MQIFIKTLTGKTITAETEPAETVADLKQKI 285
M ++I+TLTG P ET+ +K KI
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKI 30
>SB_43701| Best HMM Match : ubiquitin (HMM E-Value=0.003)
Length = 227
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 262 VADLKQKIADKEGVPVDQQRLIFAGKQLED-SKTMADYNIQKESTLHMVL 408
V+D++Q VP Q+LIF GK L + ++T+ I+K S + MVL
Sbjct: 116 VSDIEQAAQQVTQVPQCSQKLIFKGKSLTNRNQTLESLGIKKGSRI-MVL 164
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 176 NDNGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKLSGRRARSD 21
ND E DG TV PS + H R Q LSG SD
Sbjct: 1659 NDVQVAEVTSPVADGVTVTSWMTERAVKRRPSDILHLHVRTQSLSGESTPSD 1710
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 247 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 396
EPA T AD + EG P +++L G L D K MA + E L
Sbjct: 1334 EPATTGADTPSESPANEGAPPAKKQLRRPGIVLSDEKKMAVKEMMMEGDL 1383
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 385 ESTLHMVLRLRGG 423
ESTLH+VLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 385 ESTLHMVLRLRGG 423
ESTLH+VLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 312 STKTYLCGQTIGRFQNYGRLQYSKGIYSSHGVTITRRVL 428
STKTYLC +G F+ Y L +S G T+ RV+
Sbjct: 201 STKTYLCKLCLG-FRIYTHLLAKTDFHSYFGCTVHARVV 238
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 208 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 357
+ +L G I P AD++ +P DQ L F + LED +
Sbjct: 533 LNSLVGVLIRFREHPVAIAADIEAMFMQCRVIPTDQPSLRFLWRDLEDGR 582
>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 341 CLPAKISLC*STGTPSLSAIFC 276
CL ++S+C STG +LS + C
Sbjct: 360 CLSTRLSICQSTGRQNLSVLIC 381
>SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025)
Length = 537
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 208 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 357
+ +L G I P AD++ +P++Q L F + LED +
Sbjct: 53 LNSLVGVLIRFREHPVAIAADIEAMFMQCRVIPIEQPSLRFLWRDLEDGR 102
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 233 LPPKRNPQRRWPISSKKLPIK-KVC 304
LPP PQ +W +S K+P K K C
Sbjct: 142 LPPTDKPQFKWDVSISKIPSKLKEC 166
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 190 VKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD 369
V + I ++ K IT E E+V + I ++EG + +F+ E S MAD
Sbjct: 76 VNIDIEMRQKISKNITKEVGKKESVLNCTDSIKEREGRCTNLNSGVFSHTDDEKSAMMAD 135
Query: 370 YNIQ 381
++
Sbjct: 136 TELE 139
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 227 LPVNVLMNICIFTLLLTNDNGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQ 51
L VN ++N + LLLT+++ ++ A S D G Q + + I H R Q
Sbjct: 71 LKVNFMINSTLSVLLLTSEDSKKKPACESCDSGEPAQGRCNECDHFVCEQCISAHKRFQ 129
>SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -1
Query: 393 SRFLLNIVIGHSFGIFQLFARK--DKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFAR 220
S F N G+S+ IFQ+F+R+ D + + YG T +G + +GG +AR
Sbjct: 165 SAFQGNNWFGYSYAIFQIFSRRSVDGTPVQYGDT--VGFRYPYYYAYTWLYYYGGYWYAR 222
Query: 219 QCF--DEYLHFYTITYK 175
C ++YL F + ++
Sbjct: 223 SCSYNNKYLCFVSADHR 239
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 221 RAKPLPPKRNPQRRWPISS 277
R P PPKR P+RR P +S
Sbjct: 1089 RRSPSPPKREPRRRSPSAS 1107
>SB_42551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 183 TYKRQRLPRMCPCLHRWWNRATGGRHPHHESPPLNGN*FPRP 58
T RQR+ +C C+ W++ R P H+ P + N F P
Sbjct: 180 TIHRQRVACVC-CI---WHKLNAKRPPKHDMPTKSANIFTSP 217
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 226 KTITAETEPAETVADLKQKIADKEGVPVDQQRLI 327
K IT E + E V K+K ++E P+D++ L+
Sbjct: 6100 KPITREEKKVEEVKPKKEKPTEREAKPLDKKPLV 6133
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 128 TVQQAADTHTTNHLPSTAIDFHARNQKLSGR 36
T+ Q DT+T +++ + +DF R +L G+
Sbjct: 46 TLSQQDDTYTESYISTIGVDFKIRTIELDGK 76
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -2
Query: 227 LPVNVLMNICIFTLLLTNDNGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHAR 57
L VN ++N + LLLT+++ ++ A S D G Q + + I H R
Sbjct: 191 LKVNFMINSILSVLLLTSEDSKKKPACESCDSGEPAQGRCNECDHFVCEQCISTHKR 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,101
Number of Sequences: 59808
Number of extensions: 341188
Number of successful extensions: 863
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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