Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b12
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.14 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.42 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.73 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 192 KNANIHQNIDGQNHYRRNGTRRDGGR 269
           +NAN +QN D QN  ++NG R++  R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 192 KNANIHQNIDGQNHYRRNGTRRDGGR 269
           +N N  QN + QN  R+N  +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 279 LLEIGHRLCGFRFGGN 232
           +LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 97  VVWVSAACCTVPPSVEAG 150
           +VW+ AAC ++PP +  G
Sbjct: 164 LVWLGAACISLPPLLIMG 181


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 97  VVWVSAACCTVPPSVEAG 150
           V+W+ A C  VP +++ G
Sbjct: 177 VIWLLALCLAVPQAIQFG 194


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 178 VSNSVKMQIFIKTLTGKTITAETEPAET 261
           +++++K  + +  L   T+TAETE  ++
Sbjct: 1   MASAIKALLIVCALFIYTVTAETEEGQS 28


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 178 VSNSVKMQIFIKTLTGKTITAETEPAET 261
           +++++K  + +  L   T+TAETE  ++
Sbjct: 1   MASAIKALLIVCALFIYTVTAETEEGQS 28


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 43  DNF*LRAWKSIAVEGR*FVVWVSAACCT 126
           DN  +  WK +A+      +WV    CT
Sbjct: 467 DNEVIEDWKFVAMVLDRLFLWVFTLACT 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,816
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)