Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b07
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.41 
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)                    29   2.9  
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)                   29   3.8  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                24   4.7  
SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)                  28   6.6  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)               28   8.8  

>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 22  VIRVEAKNDYSLLACTAVYAYCCKCGQYIGRVSYASLQPPYSLQSVY 162
           V+R E KN+   +     + Y   CG Y GRV   +L PP+    V+
Sbjct: 20  VLRKEKKNNSHWVFGNVFFKYRKSCGAYEGRVCKPNLTPPFGRVKVH 66


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/98 (25%), Positives = 48/98 (48%)
 Frame = +2

Query: 65   ALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCG 244
            +++S L  +   N+  +  +P Y    V+ + ++ L ++C  V VV    F  S   + G
Sbjct: 985  SIVSYLQVMVFANLFTITRSPDYIRQ-VHDLVLDMLEDECLEVRVVAADTF--SGLLHYG 1041

Query: 245  NITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTA 358
              T    + SVK+  + + N+ + RKR V   ++TV +
Sbjct: 1042 IFT---LEKSVKEKFRKLANTKLPRKRKVGDTSETVAS 1076


>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 257 VNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTAA 361
           V  D+ ++QYK +V N    R RG+  DTD+ T A
Sbjct: 231 VAKDIEIEQYKDMV-NGLQQRIRGLEMDTDSTTMA 264


>SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)
          Length = 198

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +2

Query: 293 LVTNSAMFRKRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANNQT 442
           L T  +  R++ +V   DT+ + NY G++++F  +  N+ +R+ +    T
Sbjct: 86  LATKQSKVRRQKLVFKHDTLLSVNYFGVLKIFSGE-RNLQLRSSLVEGTT 134


>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
          Length = 1178

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 62   LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNV 193
            LA      AV A+ +  +FP  AY+H   YK+  + L    H +
Sbjct: 990  LAACCDAAAVQALRLGGLFPYCAYTHAYTYKMIADQLWSAMHEI 1033


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 62  LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTV----VKPKLFAYST 229
           LA      AV A+++  +FP  AY++   YK+  + L    H+V      V PK     T
Sbjct: 387 LAACCDAAAVPALHLGGLFPYCAYTYTYTYKIIADQLWSAMHDVAAAAKRVTPKKDRLGT 446

Query: 230 KTYCGN-ITEVNSDMSV 277
               GN + E ++ ++V
Sbjct: 447 TRADGNRLLETDTPVAV 463


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 24.2 bits (50), Expect(2) = 4.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 64  CTAVYAYCCKC 96
           CT +YAY C C
Sbjct: 255 CTRIYAYVCAC 265



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 61  ACTAVYAYCC 90
           ACT +YAY C
Sbjct: 246 ACTCIYAYLC 255


>SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
 Frame = +2

Query: 56  CWLALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKT 235
           C + L S L    +   +A+ P    SH++V     E LA + H V+V   +   Y+   
Sbjct: 6   CTVLLFSVLACECSGIKIAMMPQFGRSHYLVMSKLAEELASRGHEVSVYVGEEADYAIGK 65

Query: 236 YCGNITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTA-ANYLGLIEMFKDQFDN-I 409
              N+   N    +++       S +   R + S   T +A   + GL+ + K   D+ +
Sbjct: 66  --PNVKAFNVPQGLRE-------SFLGNLRAIASSKGTTSANEEFEGLVSLQKIYCDSFL 116

Query: 410 NVRNLIANNQTFDLVVVEAFADY 478
           N  +++    T D++++     Y
Sbjct: 117 NSSSMMREVGTSDVLLMSGLTRY 139


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 62   LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKL 214
            LA      AV A+++  +FP  AYS+   YK+  + L    H V     ++
Sbjct: 1227 LAACCDAAAVPALHLGGLFPYCAYSYTYTYKMIADQLWSAMHEVAAAAKRV 1277


>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +2

Query: 62  LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTV----VKPKLFAYST 229
           LA      +V A+++  +FP  AY++   YK+  + L    H V      V PK     T
Sbjct: 369 LAACCDAASVPALHLGGLFPYCAYTYAYSYKMIADQLWSAMHEVAAAAKRVTPKKDRLGT 428

Query: 230 KTYCGN-ITEVNSDMSV 277
               GN + E N+ ++V
Sbjct: 429 TRADGNRLLETNTSVAV 445


>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 151 VDYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAK 53
           V YM A SW  +H Q I +    K+ Q  KP K
Sbjct: 361 VRYMTA-SWTTRHSQSISKSNMDKQAQSIKPKK 392


>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
          Length = 516

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 148 DYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAKNSHFLLQPE 26
           DY+ + S    H  Y D + SS R  QC P  N   L QP+
Sbjct: 188 DYLGSSSLAHGHAMY-DSLGSSSRYPQCPPGFNPLALHQPK 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,528,983
Number of Sequences: 59808
Number of extensions: 507650
Number of successful extensions: 1300
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)