Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b07
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   1.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.9  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 380 EMFKDQFDNINVRNLIANNQ 439
           E++ D++D +N+  ++AN++
Sbjct: 21  ELYSDKYDYVNIDEILANDR 40


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 380 EMFKDQFDNINVRNLIANNQ 439
           E++ D++D +N+  ++AN++
Sbjct: 21  ELYSDKYDYVNIDEILANDR 40


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 363 LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTD 271
           LA + V   D   +FL    +V   L+C+ D
Sbjct: 12  LALINVKAQDDISKFLKDRPYVQKQLHCILD 42


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 247 ITAISFGRIRKQFGLDDRNVVTFF 176
           +  I+FG +  QFG   + +V FF
Sbjct: 245 VFCITFGLVAGQFGAQGKLIVDFF 268


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 124 RRKHGQYIDRIYSSKRRQQCKPAKNSHFL 38
           RR+  QY D +YS  R  +   A+  H L
Sbjct: 43  RRRWKQYQDTLYSGTRSSESLTAQAHHRL 71


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 548 ENFDTVGAVARHPVHH 595
           E FD     +RHP+H+
Sbjct: 419 ERFDQDAMASRHPMHY 434


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 627 VSSKLLRQMLGW*TGC 580
           V S  + +M+GW  GC
Sbjct: 114 VISSFMERMIGWEIGC 129


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 627 VSSKLLRQMLGW*TGC 580
           V S  + +M+GW  GC
Sbjct: 114 VISSFMERMIGWEIGC 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,883
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)