Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b06
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    29   0.44 
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   2.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.1  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   4.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   4.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   7.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   9.4  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    24   9.4  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 399 CCNYQXSHILFCITIQRCH*CILNFPTLPCPCFAAD 292
           CCN++  H        + H   +N  TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -1

Query: 196 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 38
           FT  FLS +G SNT+ V+ + L    AD  ++R + +       F   R  + +TT   L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206

Query: 37  N*DD 26
             DD
Sbjct: 207 EDDD 210


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 256  LQHIAPSITL*FFKYVL*MYFTSRFLSA 173
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +3

Query: 240  GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 380
            G  CC    NG  L    L R   +N+D  +L S  YT  N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 LDRNQLQNTDMEVLESLEYTSDNVE 356
           +D N  +++D++    LEYT+DN E
Sbjct: 8   IDPNSSEDSDIQEDAELEYTADNPE 32


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 319 CWKV*NTLVTTLNCYAKKY 375
           CWK   T+V  L  Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 340 VYSKLSNTSMSVFCS 296
           VYS L+NT++  FCS
Sbjct: 133 VYSSLANTTLEEFCS 147


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 129 FNIMHLTA-NVLLVPNALKKRDVKYIYNTYLKNYSVIE 239
           +N++  TA NV+     + + +++Y  N + K Y +IE
Sbjct: 724 YNMLRTTAVNVIRHLGVVGECNIQYALNPFTKEYCIIE 761


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 243 AMCCNGDCLAVVVLDRNQLQNTDMEVLESL--EYTSDNVELLCKKVCVI 383
           A C   D L    L   Q  NTD +V ++L    ++D+ +L+  K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,081
Number of Sequences: 5004
Number of extensions: 40730
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)